Klebsiella oxytoca KONIH1: KONIH1_28525
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Entry
KONIH1_28525 CDS
T03269
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kok
Klebsiella oxytoca KONIH1
Pathway
kok03030
DNA replication
kok03410
Base excision repair
kok03420
Nucleotide excision repair
kok03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KONIH1_28525 (ligB)
03410 Base excision repair
KONIH1_28525 (ligB)
03420 Nucleotide excision repair
KONIH1_28525 (ligB)
03430 Mismatch repair
KONIH1_28525 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kok03032
]
KONIH1_28525 (ligB)
03400 DNA repair and recombination proteins [BR:
kok03400
]
KONIH1_28525 (ligB)
Enzymes [BR:
kok01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KONIH1_28525 (ligB)
DNA replication proteins [BR:
kok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KONIH1_28525 (ligB)
DNA repair and recombination proteins [BR:
kok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KONIH1_28525 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KONIH1_28525 (ligB)
MMR (mismatch excision repair)
DNA ligase
KONIH1_28525 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KONIH1_28525 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
HHH_5
DUF3701
HHH
Nlig-Ia
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AID92905
LinkDB
All DBs
Position
complement(5953712..5955388)
Genome browser
AA seq
558 aa
AA seq
DB search
MQKGVWALVLWMLVGYGQAACPEWPQARADREIERLSQQITEWKNAYWQQGSSTVSDEVY
DQLAERLAYWRRCFTGEAPAHDASPPLKGEARHPVAHTGVRKLANQADVARWMRGQSGLW
VQPKVDGVAVTLVYRQGRLTQAISRGNGLAGEDWTARVLQIPSVPKVSDGVLANSVLQGE
LFLLREGHVQKQMGGMNARAKVAGMMMRQQAAADLNQLGLFIWAWPDGPQDMKQRLALLR
QGGFLYSALFSHPVADAQQVQQWRQRWFTSPLPFASDGVVVRREKASPGRFWVPGQGDWV
IAWKYPPASRVMEVRRISFSVGRSGKIAVVAHLEPQMLDDKRVQRVSVGSVSRWYNLDIG
IGDQLQISLAGQGIPRIDSVVWRTAQRNKPQPPAARFNALTCYFVTPECAEQFLSRLVWL
SSRSVLDIDGVGEALWRALHDARSMEHLFSWLAFTPERLQAIPGVSTQRGQRLWHQFNLA
RERPFLRWIQAMGVPIPKTAFARLKEDDWQRMQERNEEQWRRLPGIGAERARQLVTFLHH
PDVAALAKWLSGQRVPGF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaggagtctgggcgctggtgctgtggatgctggtgggatacgggcaggcagcc
tgccccgaatggccgcaggccagggccgatcgggagattgaacgtctcagccagcagata
acggaatggaaaaacgcctactggcagcaggggagcagtacggtaagcgatgaggtctat
gatcagcttgcggagcggctggcttactggcggcgctgcttcaccggcgaggctcccgct
cacgatgcgtctcctcccctaaaaggggaggccagacatccggtggcgcacaccggcgtg
cgtaaactggcaaatcaagccgacgtggcgcgctggatgcgcggtcaatccggcctgtgg
gtacagcctaaagtcgatggcgtcgcggtcacgctcgtgtatcggcaggggcgtctgacc
caggcgataagccggggtaatggcctggccggggaagactggacggccagggtcttgcag
atcccctccgtgcctaaagtctctgacggcgtactggcgaatagcgttctacagggtgag
ctgttcctgctccgcgaggggcacgtgcaaaaacagatgggcggcatgaacgcgcgggca
aaagttgccggcatgatgatgcgccagcaggctgcggcggatcttaatcaactgggtctc
tttatctgggcatggcccgatgggccgcaggatatgaaacagcggctggcgctgctgcgg
cagggcggctttctttacagcgcgcttttttcgcaccctgtcgcggatgcgcaacaggtt
caacagtggcgccagcgctggttcacttcaccgctgccttttgccagcgatggcgtcgta
gtgcggcgggaaaaagcatctcccggacgcttctgggttccgggtcagggcgattgggtc
atcgcctggaaatacccgcccgcctcacgcgtcatggaggttcgccgtatcagctttagc
gtcgggcgcagcggtaaaatagccgtggtggcgcatctggagccgcagatgctggacgat
aagcgcgtgcagcgggtgagcgtcggttcggtatcccgctggtacaatctggatatcggt
attggcgaccagctgcaaatcagccttgccgggcagggaataccgcgcatcgattcggtc
gtctggcgcacggctcagcgtaataaaccccagccaccggcggcgcgtttcaatgcctta
acctgctattttgtcacgcccgagtgtgcggaacagtttctttcgcggctggtctggctc
tcatcccgatcggttctcgatattgacggcgtgggagaagcgctatggcgggccctgcat
gacgcgcgcagcatggagcatctcttttcatggctggcgtttacgccggagcggctgcaa
gctataccgggggtctcgacgcagcgcgggcagaggctgtggcatcagttcaatcttgcg
cgcgaacggccttttctacgctggatccaggcgatgggagtccctataccgaagacggcg
tttgcccggctgaaggaggatgactggcaacggatgcaggagcgaaacgaagagcagtgg
cggcgcctgccggggatcggggcggaaagagcgcggcagctggtgacgttcttacatcac
ccggatgttgccgcactggcgaagtggctaagcgggcaacgcgttccgggattctga
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