Klebsiella michiganensis M1: HR38_24980
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Entry
HR38_24980 CDS
T03349
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kom
Klebsiella michiganensis M1
Pathway
kom03030
DNA replication
kom03410
Base excision repair
kom03420
Nucleotide excision repair
kom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HR38_24980 (ligA)
03410 Base excision repair
HR38_24980 (ligA)
03420 Nucleotide excision repair
HR38_24980 (ligA)
03430 Mismatch repair
HR38_24980 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kom03032
]
HR38_24980 (ligA)
03400 DNA repair and recombination proteins [BR:
kom03400
]
HR38_24980 (ligA)
Enzymes [BR:
kom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HR38_24980 (ligA)
DNA replication proteins [BR:
kom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HR38_24980 (ligA)
DNA repair and recombination proteins [BR:
kom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HR38_24980 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HR38_24980 (ligA)
MMR (mismatch excision repair)
DNA ligase
HR38_24980 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HR38_24980 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Prok-E2_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AIE71579
LinkDB
All DBs
Position
complement(5327854..5329878)
Genome browser
AA seq
674 aa
AA seq
DB search
MESNEQKLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAAPLASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNTDNLTYCCELKLDGLA
VSILYENGLLVQAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPQRLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHS
ARLQQFKSWGLPVSERVKLCHTPEEVLTYYRQVEEDRPKLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIXQVVNVVLSERPEETREIVFPTHCPVCHSDVERVEG
EVVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKXYVHTPADLFQLTPG
KLTGLDRMGPKSXQNVVDALEKSXXTTFARFLYALGIREVGEATAAGLAAHFGTIEALEQ
ASIDDLQKVPDVGIVVATHVRNFFAEESNREVIAQLRKEGVRWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEDEMLRLLGESRG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgaacgaacaaaaactgactgaactgcgaaccacgcttcgccatcatgaatat
ctctaccacgtcatggatacgccggaaatccctgatgcggaatacgatcggttaatgcgc
gaactgcgagagctggaagctcagcaccctgagctgatcaccccggactcgcccacccag
cgcgtcggtgccgcaccgttagcctcttttagccagattcgccatgaagtcccgatgctg
tcgctggacaacgtttttgatgaggagagcttcctcgcgttcaacaagcgggtacaggat
cgcctgaaaaataccgataacctgacttactgctgcgagctcaagctggatggcctggcg
gtcagtatcctgtatgaaaacggcctgctggtgcaggcggcgacccgcggcgatggaacg
accggtgaagatattacctccaacgtgcgtaccattcgcgcgattcccctgaagctacgc
ggtgacaatattccgcagcggcttgaggtgcgcggagaggtgttcctgccgcaggcaggg
tttgaaaaaattaatgaagaggcgcggcgaaccggaggtaaagtctttgctaacccgcgt
aacgcggcggcggggtctttacgccagctcgatccgcgaattaccgcgaagcgtccgctc
actttcttttgctacggcgtgggcgtgctggaaggcggcgagctgcctgccagccactcg
gcgcgcttgcagcagtttaagtcctgggggctgccggtcagcgagcgtgtaaagctctgc
catacgccagaggaagtgcttacttactatcgccaggttgaagaggatcggccgaagctg
gggtttgatatcgacggcgtggtcatcaaggtcgattcgctggcgctgcaggaacagctt
ggcttcgtagcccgcgcgccgcgctgggcggtggcgtttaagtttccggcgcaggagcag
atgactttcgtgcgcgacgttgagtttcaggtcgggcgcactggcgccatcacgccggtt
gcgcgtctggagccggtacacgtcgccggggtcctggtcagcaacgcgacgctgcataat
gctgatgaaatcgagcgtctggggctgcgtatcggcgataaggtggtcattcgccgcgcc
ggcgatgttatccytcaggtcgtgaacgtcgtgctctcagaacgcccggaggagacgcgt
gagatcgtgttccccacccattgtccggtatgtcattccgacgttgaacgcgtggaaggc
gaagtggtgactcgctgtaccggcggtctgatctgcggcgcccagcgtaaagaagcgctc
aagcattttgtctcccgtcgcgccctggacgttgacggtatgggcgataaaatcatcgat
cagctggttgaaaaakagtacgtgcatacgccggccgatctcttccaactgacgccgggt
aaactcaccgggctcgatcgcatggggcccaaatcarcgcagaacgtggtggatgccctg
gagaagtccamagakaccacctttgcccgtttcctttatgcgctggggatccgcgaagtc
ggtgaggcgacggcagccggtttagcggcccattttggcaccattgaggcgctggagcag
gcttcaattgacgatctgcaaaaagtgcccgatgtcgggattgtggttgccacgcacgtg
cgtaatttctttgccgaagagagcaaccgcgaagtgattgctcagctgcgtaaagaaggc
gtccgctggccggcgccggtggtggtcaatgcggaagagattgatagcccctttgccggc
aaaacggtggttctgaccggtagcctgagtcagctctcccgtgacgatgcgaaagcccgg
ctggttgcgctgggggcgaaggtggcgggcagcgtgtcgaagaagaccgacctggtcatc
gccggggaggcggcgggctctaagcttgccaaagcgcaggagctgggaattgcggtgatc
gatgaagacgaaatgctgcgtctgctcggagagtcgcgtggataa
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integrated database retrieval system
