Kordia sp. SMS9: KORDIASMS9_03212
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Entry
KORDIASMS9_03212 CDS
T05562
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kos
Kordia sp. SMS9
Pathway
kos03030
DNA replication
kos03410
Base excision repair
kos03420
Nucleotide excision repair
kos03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KORDIASMS9_03212 (ligA)
03410 Base excision repair
KORDIASMS9_03212 (ligA)
03420 Nucleotide excision repair
KORDIASMS9_03212 (ligA)
03430 Mismatch repair
KORDIASMS9_03212 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kos03032
]
KORDIASMS9_03212 (ligA)
03400 DNA repair and recombination proteins [BR:
kos03400
]
KORDIASMS9_03212 (ligA)
Enzymes [BR:
kos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KORDIASMS9_03212 (ligA)
DNA replication proteins [BR:
kos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KORDIASMS9_03212 (ligA)
DNA repair and recombination proteins [BR:
kos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KORDIASMS9_03212 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KORDIASMS9_03212 (ligA)
MMR (mismatch excision repair)
DNA ligase
KORDIASMS9_03212 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KORDIASMS9_03212 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH
5_3_exonuc
Uso1_p115_head
Motif
Other DBs
NCBI-ProteinID:
AXG70957
LinkDB
All DBs
Position
3686723..3688720
Genome browser
AA seq
665 aa
AA seq
DB search
MSTIQEKLTALRDELREHNYNYYILDNATISDYEFDMKLKELQELEAKHPEFYDPNSPTL
RVGGAITKNFNTVAHEYRMYSLDNSYSKEDLLDWEKRIHKILGVETVEYTCELKYDGASM
NLTYEDGKLIKAVTRGDGFQGDEVTNNIKTIKTVPLRLKGDFPAKFDIRGEIILPLDGFN
KMNEERVANGEEPYMNPRNTASGSLKLQDSSEVAKRPLECLLYSLKGEKLPIATQFESLK
KARQWGFKVPTVAKVAKNVDEILDFVNHWEVHRHELAYEIDGVVIKVNNLQYQDELGYTS
KAPRWAMAYKFKAEQAVTVLNEITYQVGRTGAITPVANLEPVLLAGTTVKRASLHNADQI
AKLDIRERDTVFVEKGGEIIPKIVGVHFDARPVDSTKTVYATHCPECDTPLERKEGEAQH
YCPNTMGCTPQIVGRIQHFISRKAMDIDGLGGETVALLVKEGLITNYADLYELTKEQIIP
LERMAEKSAENLVNGIEASKQIPFERVLYALGIRYVGETVAKKLAKHYKSIDALMNASSE
DLVSVDEIGVKIAESVAQFFQEEANLQIITRLQEVGVQLEFSAAQLEGLTETLLGKSFVV
SGVFEKVSRNELKKLIENNGGKVSSSISSKTSYVVAGDKMGPSKRAKAEKLNITILTEDE
FLNMI
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgagtactattcaagaaaagttaaccgctttgcgcgatgaattacgcgaacataattac
aattattacatcctagataacgctacgatttctgactatgagtttgatatgaaactcaaa
gaattgcaggaattggaagcaaaacatcccgagttttatgatccaaattcgccaacgttg
cgtgttggtggcgcgattaccaagaattttaatacggttgcacatgaatatcgtatgtat
tcgttggacaattcgtattcgaaagaagatttgttggattgggaaaagcgcattcataag
attctcggtgtggaaacggtggaatatacctgcgagctcaagtatgatggcgcttctatg
aacctcacgtacgaagatggaaagttgatcaaagcggtcacacgtggcgatggttttcaa
ggagatgaggtgaccaataatatcaaaacgattaaaacggttccgttacgcttaaaaggt
gattttcctgcaaagtttgacattcgcggcgagattattcttccgcttgacggatttaat
aaaatgaacgaagaacgtgttgccaatggtgaagaaccgtacatgaacccacgaaatacc
gcttctggaagtttaaaattgcaagacagtagcgaagtcgcgaaacgtccgttagaatgc
ttgttatacagcttaaaaggcgaaaaactaccaatagctacacagtttgaaagtttaaag
aaagcccgccaatggggatttaaagtaccaaccgtggcaaaagttgctaaaaatgtggat
gaaatcctggattttgtaaatcattgggaagtgcatcggcacgagttggcatacgaaatt
gatggcgtcgtgattaaagtcaacaatctgcaatatcaagatgaattgggctatacgtcc
aaagcaccacgttgggcaatggcgtataagtttaaagctgagcaagcggtgacggttttg
aatgaaattacgtatcaagttggacgtacaggtgctattacgcctgttgcgaatttagaa
cctgtattgttagcaggaactaccgtaaaacgtgcttcattgcataatgccgatcaaatt
gcaaaattggatattcgcgaacgcgatactgtttttgtagaaaaaggcggcgaaattatt
ccgaaaatcgtaggtgttcattttgatgcgcgtccggtagattctaccaaaaccgtatac
gcgacacactgtcccgaatgcgatacacctttagaacgaaaagaaggtgaagcacaacat
tattgtccaaacacaatgggctgtacgcctcaaattgtgggacgaattcagcattttatt
tcgcgcaaagcgatggatattgacggtttaggaggcgaaacggtggcattgttagtcaaa
gaaggattgattaccaattatgccgatttatacgaattgaccaaagaacagatcattccg
ctagagcgcatggcagaaaaaagtgcagagaatttagtgaatggtattgaagcgtcgaaa
caaattccttttgagcgtgtgttgtatgcgttgggaattagatatgtaggagaaactgtg
gctaaaaaattggcaaaacactacaaatctattgatgcgctgatgaacgcttcgtcggag
gatttagtgtcagtcgacgaaataggcgtgaagatcgccgaaagtgtggcgcaattcttt
caagaagaagctaatttgcaaattattacacgtttacaagaagttggcgtgcaattagaa
ttttcagcagcacagttggaaggattgacagaaaccttgttagggaagtcatttgttgtt
tcgggtgtgtttgaaaaagtatcgcgaaatgaattgaaaaaactcatagaaaataatgga
ggaaaagtatcatcgtccatttcttctaaaacttcgtatgtagttgcaggcgacaaaatg
ggaccgagcaaacgtgcaaaagcagaaaagttaaacattactattttgacagaagatgag
tttttgaatatgatttaa
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