Klebsiella michiganensis HKOPL1: J415_10810
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Entry
J415_10810 CDS
T03188
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
koy
Klebsiella michiganensis HKOPL1
Pathway
koy03030
DNA replication
koy03410
Base excision repair
koy03420
Nucleotide excision repair
koy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
koy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J415_10810 (ligA)
03410 Base excision repair
J415_10810 (ligA)
03420 Nucleotide excision repair
J415_10810 (ligA)
03430 Mismatch repair
J415_10810 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
koy03032
]
J415_10810 (ligA)
03400 DNA repair and recombination proteins [BR:
koy03400
]
J415_10810 (ligA)
Enzymes [BR:
koy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J415_10810 (ligA)
DNA replication proteins [BR:
koy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J415_10810 (ligA)
DNA repair and recombination proteins [BR:
koy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J415_10810 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J415_10810 (ligA)
MMR (mismatch excision repair)
DNA ligase
J415_10810 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J415_10810 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Prok-E2_C
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AHW87679
LinkDB
All DBs
Position
2269424..2271448
Genome browser
AA seq
674 aa
AA seq
DB search
MESNEQKLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEAQYPELITPDSPTQ
RVGAAPLASFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNTDNLTYCCELKLDGLA
VSILYENGLLVQAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPQRLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHS
ARLQQFKSWGLPVSERVKLCHTPEEVLTYYRQVEEDRPKLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPTHCPVCHSDVERVEG
EVVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFQLTPG
KLTGLDRMGPKSAQNVVDALEKSKETTFARFLYALGIREVGEATAAGLAAHFGTIEALEQ
ASIDDLQKVPDVGIVVATHVRNFFAEESNREVIAQLRKEGVRWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEDEMLRLLGESRG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgaacgaacaaaaactgactgaactgcgaaccacgcttcgccatcatgaatat
ctctaccacgtcatggatacgccggaaatccctgatgcggaatacgatcggttaatgcgc
gaactgcgcgagctggaagctcagtaccctgagctgatcaccccggactcgcccacccag
cgcgtcggtgccgcaccgttagcctcttttagccagattcgccatgaagtcccgatgctg
tcgctggacaacgtttttgatgaggagagcttcctcgcgttcaacaagcgggtacaggat
cgcctgaaaaataccgataacctgacttactgctgcgagctcaagctggatggcctggcg
gtcagtatcctgtatgaaaacggcctgctggtgcaggcggcgacccgcggcgatggaacg
accggcgaagatattacctccaacgtgcgtaccattcgcgcgattcccctgaagctacgc
ggtgacaatattccgcagcggcttgaggtgcgcggagaggtgttcctgccgcaggcaggg
tttgaaaaaattaatgaagaggcgcggcgaaccggaggtaaagtctttgctaacccgcgt
aacgcggcggcggggtctttacgccagctcgatccgcgaattaccgcgaagcgtccactc
actttcttttgctacggcgtgggcgtgctggaaggcggcgagctgcctgccagccactcg
gcgcgcttgcagcagtttaagtcctgggggctgccggtcagcgagcgtgtaaagctctgc
catacgccagaggaagtgcttacttactatcgccaggttgaagaggatcggccgaagctg
gggtttgatatcgacggcgtggtcatcaaggtcgattcgctggcgctgcaggaacagctt
ggcttcgtagcccgcgcgccgcgctgggcggtggcgtttaagtttccggcgcaggaacag
atgactttcgtgcgcgacgttgagtttcaggtcgggcgcactggcgccatcacgccggtt
gcgcgtctggagccggtacacgtcgccggggtcctggtcagcaacgcgacgctgcataat
gctgatgaaattgagcgtctggggctgcgtatcggcgataaggtggtcattcgccgcgcc
ggcgatgttatccctcaggtcgtgaacgtcgtgctctcagaacgcccggaggagacgcgt
gagatcgtgttccccacccattgtccggtatgtcattccgacgttgaacgcgtggaaggc
gaagtggtgacgcgctgtaccggcggtctgatctgcggcgcccagcgtaaagaagcgctc
aagcattttgtctcccgtcgcgccctggacgttgacggtatgggcgataaaatcatcgat
cagctggtcgaaaaagagtacgtgcatacgccggccgatctcttccaactgacgccgggt
aaactcaccgggctcgatcgcatggggcccaaatcagcgcagaacgtggtggatgccctg
gagaagtccaaagagaccacctttgcccgtttcctttatgcgctggggatccgcgaagtc
ggtgaggcgacggcagccggtttagcggcccattttggcaccattgaggcgctggagcag
gcttcaattgacgatctgcaaaaagtgcccgatgtcgggattgtggttgccacgcacgtg
cgtaatttctttgccgaagagagcaaccgagaagtgattgctcagctgcgtaaagaaggc
gtccgctggccggcgccggtcgtggtcaatgcggaagagattgatagcccctttgccggc
aaaacggtggttctgaccggtagcctgagtcagctctcccgtgacgatgcgaaagcccgg
ctggttgcgctgggggcgaaggtggcgggcagcgtgtcgaagaagaccgacctggtcatc
gccggtgaggcggcgggctctaagcttgccaaagcgcaggagctgggaattgcggtgatc
gatgaagacgaaatgctgcgtttgctcggagagtcgcgtggataa
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