Kangiella profundi: CW740_05595
Help
Entry
CW740_05595 CDS
T05254
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpd
Kangiella profundi
Pathway
kpd03030
DNA replication
kpd03410
Base excision repair
kpd03420
Nucleotide excision repair
kpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CW740_05595 (ligA)
03410 Base excision repair
CW740_05595 (ligA)
03420 Nucleotide excision repair
CW740_05595 (ligA)
03430 Mismatch repair
CW740_05595 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpd03032
]
CW740_05595 (ligA)
03400 DNA repair and recombination proteins [BR:
kpd03400
]
CW740_05595 (ligA)
Enzymes [BR:
kpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CW740_05595 (ligA)
DNA replication proteins [BR:
kpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CW740_05595 (ligA)
DNA repair and recombination proteins [BR:
kpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CW740_05595 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CW740_05595 (ligA)
MMR (mismatch excision repair)
DNA ligase
CW740_05595 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CW740_05595 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
5_3_exonuc
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AUD78752
UniProt:
A0A2K9AMB1
LinkDB
All DBs
Position
1195451..1197466
Genome browser
AA seq
671 aa
AA seq
DB search
MSHKKSEIEKRVAELRATLDNYNYQYYVLDNPTVPDAEYDRLLRELQQLEKEHPEVVSSD
SPTQRVGAKPDNGFEEVIHELPMLSLDNAMSDEELISFDKRIKDRLKSSTEIEYVCEPKL
DGLAVSLLYENGQLVRGATRGDGTTGENITLNVRTIRAIPLKLRGEHIPERIEIRGEVFM
PKSVFESLNDEAREQGGKTFANPRNAAAGSLRQLDPSITAKRKLSFYAYSMGLVSDDYEL
ADSHYGRLQQIKTLGLPVSEEVKVVKGADGCQHYHQSILQKRDKLAYEIDGVVNKVNSIA
LQEELGFVARAPRWAIAHKFPAQEEMTQLLGVDFQVGRTGALTPVARLEPVSVGGVTVSN
ATLHNMDEIARLDARIGDTVIIRRAGDVIPQVVSVILEKRPSDAEEILTPTNCPVCDSPV
ERTEGEAVIRCTGGLICSAQRNESIKHFASRKAMDIDGLGDKLVEIFAEKEMIKTISDLY
RLKASDIAALDRMGEKSAENLINALEQSKSTTLPKFLYSLGIREVGEVTAKNIANHFCSL
DGIIAASQEELESVPDVGPIVAHHIRAFFDNEENIEQINELKQLGVNWPDIEKKSDEELP
LKGKTYVITGTLEGISRSEAKSKLEALGAKVSGSVSSKTTALIAGASAGSKLKKAQELGV
EVLDQSFLNNL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacaaaaagtctgagatagaaaagcgcgtagctgagttacgcgctaccctcgat
aattataattaccaatattacgttttagataacccaacagttcccgatgccgaatatgat
cgcttacttcgtgagttacaacagttagagaaagagcatccagaagttgtgtcatcagat
tcgccaacccagcgtgttggcgcaaaaccagacaatggttttgaggaagtgattcatgaa
ttacccatgttgtctcttgataatgccatgtctgatgaggaactgataagcttcgacaag
cggattaaagaccgattaaagtcatccactgaaattgagtatgtctgcgaacctaaactg
gatggtctagcagtaagtttattgtatgaaaatggacagttggtccggggcgcaactcga
ggtgatggaacgactggtgaaaacattacattaaacgtcagaaccattcgagctattccg
ttgaagttacggggtgagcatatccctgagaggattgaaatacgtggtgaagtgttcatg
cctaaatcggtattcgagtctctcaatgatgaagccagagagcaggggggtaaaaccttc
gctaaccctcgtaatgcagcggcaggcagtctacgtcagttagatccatcaattacggca
aaacgaaagctatcattttatgcctactcaatgggcctggtctctgatgattatgaatta
gcggattctcattacggtcggttgcaacaaatcaaaacattgggtttacctgttagtgaa
gaagtcaaagtcgtcaaaggtgcagacggttgtcagcattaccatcagtcgatattacaa
aaacgagataagttggcatacgaaattgatggggtggtaaataaagtcaattctatagca
ttgcaggaagagctgggctttgtcgctcgcgctcctcgctgggcaattgcccataaattt
ccagcacaggaagaaatgactcagttgctgggtgttgatttccaagtaggacgtaccggt
gcattaacgcccgttgcaagacttgagccagtatccgttggaggcgttaccgttagtaac
gctactctgcataatatggacgaaatcgcacgacttgatgctcgtattggcgatacagtt
attattcgacgcgccggagatgtaattccacaagttgtcagcgttattcttgaaaagcgc
ccatctgatgccgaagaaattttaacgcctaccaattgtccggtctgtgactcacccgtt
gaaagaaccgaaggcgaagctgttattcgatgtactggtggacttatatgttccgcgcaa
cgtaatgaatccattaaacattttgcctcacgtaaagccatggatattgatggtctcgga
gataagctggtagagatttttgctgagaaggagatgattaaaacaatcagtgatctctat
cgattaaaggccagtgatattgctgctcttgatcgcatgggggaaaagtcagcggagaat
ctgattaacgctttagagcagagtaaaagtaccactttaccaaagtttttatactcccta
ggtattcgcgaagttggcgaggttactgctaaaaatattgctaatcatttttgttctttg
gatggaattattgcagccagtcaggaagaacttgagtctgtgccagatgtcggtcctatt
gtcgcgcatcacattcgcgccttttttgataatgaagaaaatattgagcaaatcaatgaa
ttgaaacagttgggtgttaactggcccgatatcgaaaagaaatctgatgaagaattacca
ctgaaaggcaagacttatgttattacgggtactctagaaggcatcagtcgaagcgaagca
aaatcaaaacttgaagcattgggagccaaggtttcaggttccgtttccagtaaaactaca
gccttaatcgcaggtgcgagtgcagggagtaaattaaaaaaggcgcaggaactgggtgtt
gaagttctagaccagtcgttccttaataatctttag
DBGET
integrated database retrieval system
