Klebsiella variicola 342: KPK_0101
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Entry
KPK_0101 CDS
T00772
Symbol
ligB
Name
(GenBank) NAD(+)-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpe
Klebsiella variicola 342
Pathway
kpe03030
DNA replication
kpe03410
Base excision repair
kpe03420
Nucleotide excision repair
kpe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KPK_0101 (ligB)
03410 Base excision repair
KPK_0101 (ligB)
03420 Nucleotide excision repair
KPK_0101 (ligB)
03430 Mismatch repair
KPK_0101 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpe03032
]
KPK_0101 (ligB)
03400 DNA repair and recombination proteins [BR:
kpe03400
]
KPK_0101 (ligB)
Enzymes [BR:
kpe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KPK_0101 (ligB)
DNA replication proteins [BR:
kpe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KPK_0101 (ligB)
DNA repair and recombination proteins [BR:
kpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KPK_0101 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KPK_0101 (ligB)
MMR (mismatch excision repair)
DNA ligase
KPK_0101 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KPK_0101 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH
DUF3701
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ACI07377
UniProt:
B5XTF0
LinkDB
All DBs
Position
106456..108132
Genome browser
AA seq
558 aa
AA seq
DB search
MRKGGWWLALGMFSASALATCPDWPPARGRQEISRLHQQIVAWKEDYWRQGASEVSDEVY
DQLTLRLAQWRQCFPGTTPEDDDLPPPTGDARHPVAHTGVRKLADEVSVAHWMKNKTDLW
IQPKVDGVAVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKVTTGELANSVLQGE
LFLRRDGHVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLLT
QAGFKYSGQYTHPVTRVEQVAQWRQRWYRSPLPFVSDGVIVREGREPPGRAWSPGKGEWL
AAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRVQRVNVGSVARWQALDIG
VGDQLQISLAGQGIPRIDAVVWRTAERHKPTPPAAKFNALTCYFATPECSEQFLSRLIWL
SSKSALDVDGVGEHLWRAIQQQNPMTHIFSWLALTVEQLQAVPGISAARGQHLWHQFDLV
RKRPFIRWVLAMGLPVPQGALAQLESENWHLLAAKSEAQWRALPGVGEIRARQLVAFLHH
PDVVALAQWLSGQRIPGF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaggagggtggtggctggcgctagggatgttctctgccagcgcgctggcgacg
tgtccggactggccgccggccagaggaaggcaggagatttcacgccttcatcagcaaatt
gtcgcctggaaagaggactactggcgacaaggcgccagcgaagtgagcgatgaggtttac
gaccagctcaccctgcgcctggcgcagtggcgacaatgctttccgggcacgacgcctgaa
gatgacgatctgcctccgcccaccggcgatgcgcgtcatccggtggcccataccggcgtg
cgcaagctggcggatgaggtcagcgtggcccactggatgaaaaataaaaccgacctgtgg
atacagcctaaagtggacggcgtggcggtgaccctggtctatcgccaggggagtttggtt
caggccattagccgcggcgatggtctgcgcggtgaggcatggaccgcccgagcgcggcag
atcccggcgctggcgaaagtgacgaccggtgaactggccaacagcgtgctgcagggggag
ctgtttctgcgccgggacggccatgttcagcagcaggctggggggatgaacgcgcgggcg
aaagtcgccgggttgatgatgcgagccgacgcggcggcggcgctcagtcaactggacgtt
tttatctgggcctggccagacggcccgtcggatatgcgccgtcgacagcagctgctgacg
caggcggggtttaagtacagcgggcaatatacccacccggtgacacgcgtcgaacaggtg
gcgcagtggcgccagcgctggtatcgctcgccgcttcccttcgtcagcgatggcgtgatt
gtgcgcgaagggcgcgaaccgccgggacgtgcctggtctcccggaaagggagagtggctg
gcggcctggaagtatcctccggcctcgcaagtgatggaggtacgggcgatccatttcagc
actggccgcagcggcaggctcaacgtcgtggcccagcttgagccccagcggctggatgat
aaacgcgtgcagcgggttaatgttggctctgtggcccgctggcaggcgctggatattggg
gttggcgatcagctgcagatcagtctggcagggcaggggattcctcggatcgacgccgtc
gtctggcggacggccgagcgccataaaccgacgccgccggcggcgaaattcaatgcgcta
acctgctatttcgccacccctgagtgcagcgaacagtttctttcccggctgatctggctg
tcatcaaagtccgcgctggatgtcgatggcgtgggggaacatttatggcgcgccattcag
cagcaaaacccgatgacgcatattttttcctggctggcgcttacggtggagcagctgcag
gcggtgccagggatctccgccgcccgcgggcagcacctctggcatcaatttgatctcgtt
cgcaaacggccttttatccgctgggtgctggcgatggggctcccggtgcctcagggggcg
ctggcgcagctcgaaagcgagaactggcatctgctggcggcaaaaagtgaggcgcaatgg
cgcgcgctgccgggcgtgggggagatcagagcccgccagttggtggccttcctgcaccat
ccggatgtggtggcgctggcgcaatggctcagtggtcagcgcatccccggattttga
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