Kosmotoga pacifica: IX53_08995
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Entry
IX53_08995 CDS
T03949
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpf
Kosmotoga pacifica
Pathway
kpf03030
DNA replication
kpf03410
Base excision repair
kpf03420
Nucleotide excision repair
kpf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IX53_08995 (ligA)
03410 Base excision repair
IX53_08995 (ligA)
03420 Nucleotide excision repair
IX53_08995 (ligA)
03430 Mismatch repair
IX53_08995 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpf03032
]
IX53_08995 (ligA)
03400 DNA repair and recombination proteins [BR:
kpf03400
]
IX53_08995 (ligA)
Enzymes [BR:
kpf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IX53_08995 (ligA)
DNA replication proteins [BR:
kpf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IX53_08995 (ligA)
DNA repair and recombination proteins [BR:
kpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IX53_08995 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IX53_08995 (ligA)
MMR (mismatch excision repair)
DNA ligase
IX53_08995 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IX53_08995 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
RNA_ligase
GT4-conflict
UPF0758_N
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AKI97934
UniProt:
A0A0G2ZEG8
LinkDB
All DBs
Position
1906806..1908833
Genome browser
AA seq
675 aa
AA seq
DB search
MNVGKVPHEAIERVKKLREELNYHSYRYYILNDPIITDHEYDMMLKELMNLEKKYPELIT
PDSPTQRVGAKPLDGFKEVRHSVRLYSLDNTYSEEEILEFDRRVKRLLGVESLEYVCELK
IDGLSISLRYESGILVLAATRGDGIVGEDVTANVKTIKSIPLKLRNPLDIEIRGEVFLPK
SEFKSINDERSEEGLPLFANPRNAAAGTLRQLDPKEVARRNLDAFFYQIVDPYKYRLETQ
WEVLDFMKEIGLKTEPNAKLVGDAMEIIEYWKRWQQDKHSLNYAVDGAVIKVNSIHQQEE
LGYTAKSPRWAIAFKFPAEQARTKLLDVTFQVGRTGVITPVAELEPVTLAGTVVKRATLH
NFDYIKEKDIRIGDQVILEKAGEIIPQIIKPIIELRTGEEKTIEPPTECPVCGEIVGKLK
EEEVALRCMNPTCPAKLERRLMLFVSRDAMDIRGLGGKMITRLISTGLVKKFSDLYKLTP
FDLAQLGSGVGDKTISNLLKEIEKSKKNPLSKLLVGLGIPGVGKKLAYDLARHFVTLEAL
EKAGVNELLEVQGVGKELAENIYAFFHNDEIEEELKELKAYVNTEEPKKEVKGILAGKKV
VVTGVLKNYTRKEIHDLITALGGEVSSSVSKRTDLLIVGENPGSKLEKAKKAGVKIITET
EFQKLIKGDGANDIS
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtgggtaaggtaccgcatgaagcgatcgaaagggttaagaaactccgggaagaa
ttgaactatcattcttacagatattatattctgaatgatcctataatcactgatcatgaa
tatgatatgatgcttaaagaactaatgaaccttgaaaagaaataccccgaactcattaca
cccgattctccgacgcagagggtcggagctaaacccctcgatggcttcaaagaggtaaga
cactctgtaaggctatatagcctggacaacacctactctgaagaagaaatccttgaattc
gataggagagtgaaacgcctccttggtgttgaatcattggagtatgtatgtgaactgaag
atagatggtctttccattagtctgcgttatgagtccggaatacttgtgctggctgccact
cgtggcgatggaatcgtcggagaagatgttaccgcaaacgtaaagaccataaagtcgata
cctttgaaattgagaaatcccctagatattgaaatcagaggggaagtgttccttcccaaa
agtgagttcaagtcaataaatgacgagaggagtgaagagggactccctctcttcgctaat
ccccgaaatgccgctgcaggcacattgagacagctagatcccaaagaagtagcgagaaga
aatctcgatgcttttttttaccagatagttgatccctacaaatacaggttggaaacccag
tgggaagtgttggatttcatgaaggaaatagggttaaaaacagagcccaatgcaaaatta
gtcggtgatgcaatggaaatcatcgaatactggaaacgctggcaacaggataagcactcg
ctcaattatgctgttgatggggcagttatcaaagttaattctatacatcaacaggaagaa
ctcggttataccgctaaaagcccaagatgggcgatcgcctttaaatttccagctgaacag
gccagaacaaagttgcttgacgttacttttcaggttggacgaactggtgtgatcactcca
gttgcagaattggaaccagttactctggccgggactgtcgtcaaacgcgccacacttcac
aacttcgattatataaaagaaaaagatatcaggatcggtgatcaggtgatactggaaaaa
gccggagagataattcctcagataattaagccgattatcgagctccgtacgggtgaggag
aaaacaattgagcctccaaccgaatgtcccgtttgtggagaaatcgtgggtaaattgaaa
gaagaggaagtggctttgcgatgcatgaatcccacctgccctgcaaaactggagagaaga
ctcatgctttttgtatcacgcgatgccatggacattcgcggtcttggcggaaaaatgatc
acgagactcatatccaccggcctggtgaagaagttttccgatctctacaaactgactcca
tttgacctggcacagctcggaagcggtgttggcgataaaacaatttcaaatctactcaag
gaaattgaaaaaagcaaaaagaatccgctgagcaagctcctagtaggactgggaattccc
ggtgtaggtaagaaattagcctacgatctcgccaggcattttgtaaccctcgaagccctt
gaaaaagctggagtaaacgagcttctcgaggttcaaggtgttggtaaagaacttgcagaa
aacatatatgcctttttccataacgatgagatagaagaagagctgaaggagttaaaagca
tatgtaaatactgaagaacccaaaaaggaagtcaaaggcatccttgccgggaagaaggtg
gttgtgacaggggttttgaagaattatacccgtaaagaaattcatgatttgataacagcg
cttggaggagaggtgtcttcgagtgtttcgaagagaacagatttgcttatcgttggtgaa
aatcctggttctaaactcgaaaaagcaaagaaagcaggcgtgaagatcattaccgaaacc
gagtttcagaaattgatcaagggagatggtgcaaatgatatatcttga
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