Klebsiella pneumoniae subsp. pneumoniae KPNIH32: KPNIH32_26870
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Entry
KPNIH32_26870 CDS
T03468
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpg
Klebsiella pneumoniae subsp. pneumoniae KPNIH32
Pathway
kpg03030
DNA replication
kpg03410
Base excision repair
kpg03420
Nucleotide excision repair
kpg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KPNIH32_26870 (ligB)
03410 Base excision repair
KPNIH32_26870 (ligB)
03420 Nucleotide excision repair
KPNIH32_26870 (ligB)
03430 Mismatch repair
KPNIH32_26870 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpg03032
]
KPNIH32_26870 (ligB)
03400 DNA repair and recombination proteins [BR:
kpg03400
]
KPNIH32_26870 (ligB)
Enzymes [BR:
kpg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KPNIH32_26870 (ligB)
DNA replication proteins [BR:
kpg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KPNIH32_26870 (ligB)
DNA repair and recombination proteins [BR:
kpg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KPNIH32_26870 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KPNIH32_26870 (ligB)
MMR (mismatch excision repair)
DNA ligase
KPNIH32_26870 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KPNIH32_26870 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
HHH
RNA_ligase
DUF3701
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AIW79193
UniProt:
A0A3N0MBB9
LinkDB
All DBs
Position
complement(5360345..5362021)
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AA seq
558 aa
AA seq
DB search
MRKGGWWLALGMFSASALATCPDWPPARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVY
DQLTLRLAQWRQCFPGATPEDDDLPPPTGDARHPVAHTGVRKLADEDSVARWMKNKSDLW
IQPKVDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALEKVMTGELADSVLQGE
LFLRRGGHVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLLT
QAGFKYSGQYTHPVSSIEQVAQWRQRWYRSPLPFVSDGVIVREGREPPGRVWSPGKGEWL
AAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKRVQRVNVGSVSRWQMLDIG
VGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALTCYFATPECSEQFLSRLIWL
SSKSALNVDGVGENLWRVIQQQNPMTHIFSWLALTVEQLQAVPGISAARGQHLWHQFDLV
RKRPFIRWVLAMGIPVPQGALAQLESENWHLLAAKSEAQWRTLPGVGEIRARQLVAFLHH
PDVVALAQWLSGQRIPGF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaggagggtggtggctggcgttagggatgttctctgccagcgcgctggcgacg
tgtccggactggccgccggccagaggaaggcaggagacatcacgccttcatcagcaaatt
gtcgcctggaaagaggcttactggcggcagggcgccagcggagtgagcgatgacgtttac
gaccagctcaccctgcgcctggcgcagtggcgacaatgctttccgggcgcgacgcctgag
gatgacgatctgcctccgcccaccggcgatgcgcgtcatccggtggcccataccggcgtg
cgcaagctggcggatgaggacagcgttgcccgctggatgaaaaataaatccgacctgtgg
atacagcctaaagtggacggcgtggcggtgactctcgtttatcgccaggggcgtctggtt
caggccattagccgcggcgatggtctgcgcggtgaggcatggaccgcccgagcccggcag
atcccagcgctggagaaagtgatgaccggtgaactggccgacagcgtactgcagggggag
ctgtttctgcgccggggcggccatgttcagcagcaggctggggggatgaacgcgcgggcg
aaagtcgccgggttgatgatgcgagccgacgcggcggcggcgctcagtcaactggacgtt
tttatctgggcctggccagacggcccgtcggatatgcgccgtcgacagcagctgctgacg
caggcggggtttaagtacagcgggcaatatacccacccggtgtcgagcatcgagcaggtg
gcgcagtggcgccagcgctggtatcgctcgccgctgcccttcgtcagcgacggtgtgatt
gtgcgcgaaggacgcgagccgccagggcgagtctggtcgcccggaaagggcgagtggctg
gctgcctggaaatatcctccggcatcgcgggtgatgcaggtacgggcgatccgtttcagt
accggccgcagcggcagactcaacgtggtggccgagcttgagccccagcggctggatgat
aaacgcgtgcagcgggttaacgttggctctgtgtcccgctggcagatgctggatattggg
gttggcgatcagctgcagatcagtctggcagggcagggtattcctcgggtcgacgccgtc
gtctggcggacggccgagcgccataaaccgacgccgccgccggcgaaatttaatgcgcta
acctgctatttcgccacccctgagtgcagcgaacagtttctttccaggctgatctggttg
tcatcaaagtccgccctgaatgtcgatggcgtgggggaaaatttatggcgcgtcattcag
cagcaaaacccgatgacgcatatcttttcctggctggcgcttaccgttgagcagctgcag
gcggtgccagggatttccgccgcccgcgggcagcacctctggcatcagtttgatcttgtt
cgcaaacgaccttttatccgctgggtgctggcgatggggatcccggtgccgcagggggcg
ctggcgcagctcgaaagcgagaactggcatttgctggcggcaaaaagtgaagcgcaatgg
cgcacgctgccgggcgtgggggagatcagagcccgccagctggtggctttcctgcaccat
ccggacgtggtggcgctggcgcaatggcttagcgggcagcgcatccccggattttaa
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