Kibdelosporangium phytohabitans: AOZ06_45555
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Entry
AOZ06_45555 CDS
T04088
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kphy
Kibdelosporangium phytohabitans
Pathway
kphy03030
DNA replication
kphy03410
Base excision repair
kphy03420
Nucleotide excision repair
kphy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOZ06_45555
03410 Base excision repair
AOZ06_45555
03420 Nucleotide excision repair
AOZ06_45555
03430 Mismatch repair
AOZ06_45555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kphy03032
]
AOZ06_45555
03400 DNA repair and recombination proteins [BR:
kphy03400
]
AOZ06_45555
Enzymes [BR:
kphy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AOZ06_45555
DNA replication proteins [BR:
kphy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AOZ06_45555
DNA repair and recombination proteins [BR:
kphy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AOZ06_45555
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOZ06_45555
MMR (mismatch excision repair)
DNA ligase
AOZ06_45555
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AOZ06_45555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
PTCB-BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
BRCT_2
DUF7741
RNA_lig_T4_1
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
ALG13166
UniProt:
A0A0N9I381
LinkDB
All DBs
Position
complement(10201790..10203910)
Genome browser
AA seq
706 aa
AA seq
DB search
MTSTDEPQGVEDVPAGARTRHAELADEVRGHQFRYYVLDSPTITDGEFDKLLGELQGLEE
QHPALATPDSPTQQVGGTFSTEFTAVDHLERMLSLDNAFDADEMTSWFDRVAKEVGDAAH
YLCELKIDGLAINLLYQDGRLVRGLTRGDGRTGEDVTLNVRTIEDVPEVLTGTDEYPVPK
LVEVRGEVFFRVEDFLELNAKQAEAGKQVYANPRNTAAGSLRQKDPSVTASRKLRLICHG
LGKRAGFELDRQSHAYEALQAWGLPVSTHTRVLSTHKEVNDFIKYWEDHRHDAEHEIDGI
VIKVDEVPLQRRLGTTSRAPRWAIAFKYPPEEVTTKLLDIRVNVGRTGRVTPYAVTEPVS
VAGSTVARATLHNASEVKRKGVMIGDRIVLRKAGDVIPEVLGPVVDARTGGEREFVMPVS
CPECGTLLRPEKEADVDIRCPNAQYCPGQLRERLDYIGSRNALDIEVLGYESAAALVNSD
VYDNEADLFDLDEDDLKRVELFRTIAGELSANGAKLAQNLQAAKQRPLWRVLVALSIRHV
GPTAARALAIEFGSLERIFEATEEELAAAEGVGPTIVTALRDWWAIDWHREVVGRWREAG
VNMADERDESVPRNLQGLSIVVTGTLPTLSRDEAKEAIIARGGKAVGSVSKKTSFVVVGD
SPGAKYDKAVQLKVPVLDEDGFRVLLDQGPDAATEIATIGGDEETG
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgaccagcactgatgaaccgcaaggcgtcgaagacgtgccggcgggcgcccgcacgcga
cacgcggagctggccgacgaggtccgcggccaccagttccgctactacgtgctggattcg
ccgacgatcacggacggcgagttcgacaagctgctcggtgagctgcagggccttgaggag
caacaccccgcgctagccacgccggattcgccgacgcagcaggtcgggggcacgttctcc
accgagttcaccgcggtcgaccacctcgaacgcatgctcagcctcgacaacgcgttcgac
gcggacgagatgacctcgtggttcgaccgggtcgccaaggaggtcggggacgccgcacac
tacctgtgcgagctgaagatcgacggcctcgcgatcaacctgctctaccaagacggccgc
ctcgtcagggggctgaccaggggcgacgggcgcacgggcgaggacgtcacgttgaacgtc
cgcacgatcgaggacgtgccggaggtgctgaccggcacggacgagtacccggtgccgaag
ctggtcgaggtccgcggcgaggtcttcttccgcgtcgaggacttcctggaactcaacgcc
aagcaggccgaggcgggcaagcaggtctacgccaacccgcgcaacacggcggccggttcg
ttgcggcagaaggacccgagtgtcaccgcgagccgcaagctccgcttgatctgccacggt
ctcggcaagcgcgccggtttcgagctggaccgccagtcgcacgcgtacgaggcgttgcag
gcgtggggcctgccggtgtcgacgcacaccagggtgctgtcgacgcacaaagaggtcaac
gacttcatcaagtactgggaggaccaccggcacgacgccgagcacgagatcgacggcatc
gtgatcaaggtcgacgaggtgccgttgcagcgccgcctcggcaccacgtcccgcgcgccg
cgctgggcgatcgcgttcaagtacccgccggaagaggtcacgaccaagctgctcgacatc
cgcgtcaacgtcggccggaccggccgggtcacgccgtacgcggtgacggagccggtgtcg
gtcgcggggtccacggtcgcccgcgcgaccttgcacaacgccagtgaggtcaagcgcaag
ggcgtcatgatcggcgaccgcatcgtgctgcgcaaggccggtgacgtgatccccgaggtg
ctcggcccggtcgtcgacgcgcgcacgggcggggagcgcgagttcgtgatgccggtgtcg
tgccccgagtgcggcacgctgctgcgtcccgagaaggaagcggatgtcgacatccgttgt
cccaacgcgcagtactgcccggggcagttgcgtgagcggctggactacatcggcagccgc
aacgcgctggacatcgaggtgctcggctacgagagcgcggcggcgctggtcaattccgat
gtgtacgacaacgaagcggacctgttcgacctggacgaggacgacctcaagcgggtcgag
ctgttccggacgatcgcgggtgagctgtcggccaacggcgccaagctggcccagaacctc
caggcggccaaacagcggccgttgtggcgagttctcgtcgccctgtccatccggcacgtc
ggcccgacggcggcgcgggcgctggcgatcgagttcggctcgctcgaacggatcttcgaa
gccactgaggaggagctggccgcggccgagggggtcgggccgacgatcgtgaccgcgctg
cgggactggtgggcgatcgactggcaccgcgaggttgtcgggcgctggcgcgaagcgggt
gtgaacatggcggacgagcgggacgaatcggtgccgcgcaacctgcaaggtttgtccatt
gtggtcaccggaaccctgccgacgctgtcgcgcgacgaggcgaaggaggccatcatcgcc
cgtggtggcaaggcagtcggctcggtgtcgaagaagacgtcgttcgtcgtggtcggggac
tcgcccggcgccaagtacgacaaggccgtgcagctcaaggtcccggtgctcgacgaggac
ggtttccgcgtcctgctcgaccagggcccggacgccgccaccgagatcgccacgatcggt
ggtgacgaggaaaccggatag
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