Pantoea piersonii: N5580_04820
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Entry
N5580_04820 CDS
T08710
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpie
Pantoea piersonii
Pathway
kpie03030
DNA replication
kpie03410
Base excision repair
kpie03420
Nucleotide excision repair
kpie03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N5580_04820 (ligA)
03410 Base excision repair
N5580_04820 (ligA)
03420 Nucleotide excision repair
N5580_04820 (ligA)
03430 Mismatch repair
N5580_04820 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpie03032
]
N5580_04820 (ligA)
03400 DNA repair and recombination proteins [BR:
kpie03400
]
N5580_04820 (ligA)
Enzymes [BR:
kpie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N5580_04820 (ligA)
DNA replication proteins [BR:
kpie03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N5580_04820 (ligA)
DNA repair and recombination proteins [BR:
kpie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N5580_04820 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N5580_04820 (ligA)
MMR (mismatch excision repair)
DNA ligase
N5580_04820 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N5580_04820 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Prok-E2_C
5_3_exonuc
HHH
DZR_2
RNA_pol_A_CTD
DUF4874
Motif
Other DBs
NCBI-ProteinID:
WBG91881
UniProt:
A0AAJ5UAA6
LinkDB
All DBs
Position
1025694..1027712
Genome browser
AA seq
672 aa
AA seq
DB search
MKSVQDQITELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRALEEQHPDLITPDSPTQ
RVGAAPLTVFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSSDDIAYCCELKLDGLA
VSLLYENGLLTRAATRGDGTTGENITANVRTIGAIPLRLKGNDFPARLEVRGEVFMTQRG
FEKLNAEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGELPGSHY
ARLQQFKAWGLPVSDRIRLVQGAEEALAFYRNVEETRPDLGFDIDGVVIKVDSQALQERL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAVTPVARLEPVLVAGAMVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPADAREVVFPTHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGLGDKIIDQLVETEYVKTPADLFRLTPE
KLLGLDRMGPKSAQNVVNALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMD
ADLEALIAVQDVGTVVATHVRNFMEEESNREVIRQLVEEAGVHWPRIEVVKAEEIDSPFA
GKTVVLTGSLTQLTRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIEV
IDEAEMIRLLDA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatccgttcaggaccagatcaccgaactgcgcaccacgctgcgccatcatgaatac
ctttatcacgttatggacgcgcccgagataccggacgccgaatatgaccgcctgatgcgc
gaactgcgcgcgctggaagagcaacatcccgatctcattacgcccgattcgccgacccag
cgcgttggtgcggcgccgctgacggtatttgaacaggtgcgccatgaggtgccgatgctg
tcgctggacaatacctttgacgaagccggttttctcgccttcaacaagcgcgtgcaggat
cgcctgaaaagcagtgacgatatcgcctactgctgcgaactgaagctggatggcctggcg
gtaagcctgctctatgaaaatggcctgctgacgcgtgccgcaacccgcggcgacggcacc
acgggagagaacatcaccgctaacgttcgcaccatcggcgcgattccgctgcgcctgaag
ggcaatgattttcctgcgcggctggaagtgcgcggcgaagtctttatgacgcagcgcggc
tttgaaaagctcaatgccgaagcgcgtcgcaccgacggcaaggtcttcgccaacccgcgc
aacgccgctgctggctccctgcgtcagctcgacccgcgcatcaccgcgaagcgcccgctg
acctttttctgctacggcttcggcctgctggaagggggggaactccctggcagccactat
gcgcgactgcaacagtttaaagcctggggattgccggtcagcgaccggatccggctggta
cagggcgcggaagaggcgctggcgttttaccggaatgtagaagagacgcgtcccgatctg
ggattcgatatcgacggcgtggtgatcaaagtcgactcgcaggcgctgcaggaacgcctc
ggttttgtggcgcgcgcgccgcgctgggcagtggcgttcaagtttccggcgcaggaacag
atgacgttcgtgcgcgacgtggaatttcaggtaggccgtaccggcgccgtgacgccggta
gcgcgtctggagccggttctggtggcgggcgcgatggtgagcaacgcgaccctgcacaac
gcggatgagatcgagcgtctcggcctgcgcattggcgataaggtggtgatccgccgcgcg
ggcgacgtcattccgcaggttgtaaacgtggtgctctccgagcgtccggccgatgcgcgc
gaagtggttttccccacgcactgtccggtatgcggatctgacgttgaacgcgtcgagggt
gaggccgtgacgcgctgtaccggcgggctaatctgcggcgcgcagcgcaaagaggcgctg
aagcactttgtctcgcgtcgcgcgatggacgtcgatggcctgggcgataaaattatcgac
caactggtggagaccgaatatgtcaaaacgcctgcggatctgttccgcctgacgccagag
aagctgcttggcctggatcgcatggggccgaaatctgcgcaaaacgtggtaaacgcgctg
gagaaggcgaaatcgactacgctggcgcgttttctctacgcgctcggcatccgtgaagtg
ggcgaagcgaccgccgccaacctggcgaatcactttggcgagctgcaaaaagtgatggat
gccgatctggaggcgctgattgcggttcaggatgtcggcaccgttgtcgccacccacgtg
cgtaactttatggaagaagagagcaaccgcgaagtcattcgtcagctggtggaagaggcg
ggggtgcactggcccaggatcgaggtggtgaaggcggaagagatcgacagcccgttcgcc
ggtaaaaccgtggtgctgaccggctcgctgacacagctaacgcgcgatgaggctaaagat
cgcctgaccgcgcttggcgcgaaggtgagcggcagcgtctcgaagaaaaccgatctggtt
atcgcgggcgaagcggctggctccaagctggtcaaagcgcaggagctgggcattgaggtt
atcgacgaagccgaaatgattcggctgctggatgcctga
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