Klebsiella variicola KP5-1: A593_04045
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Entry
A593_04045 CDS
T03368
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpk
Klebsiella variicola KP5-1
Pathway
kpk03030
DNA replication
kpk03410
Base excision repair
kpk03420
Nucleotide excision repair
kpk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A593_04045 (ligA)
03410 Base excision repair
A593_04045 (ligA)
03420 Nucleotide excision repair
A593_04045 (ligA)
03430 Mismatch repair
A593_04045 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpk03032
]
A593_04045 (ligA)
03400 DNA repair and recombination proteins [BR:
kpk03400
]
A593_04045 (ligA)
Enzymes [BR:
kpk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A593_04045 (ligA)
DNA replication proteins [BR:
kpk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A593_04045 (ligA)
DNA repair and recombination proteins [BR:
kpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A593_04045 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A593_04045 (ligA)
MMR (mismatch excision repair)
DNA ligase
A593_04045 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A593_04045 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Prok-E2_C
DZR_2
DUF2229
Motif
Other DBs
NCBI-ProteinID:
AID99751
UniProt:
A0A0B7GGP1
LinkDB
All DBs
Position
complement(838615..840630)
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELITPDSPTQ
RVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDDLTYCCELKLDGLA
VSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHS
ARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLSAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAALAAHFGTLEALEQ
ASIEELQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgatcgaacaacaactgactgaactgcgaaccacgcttcgccatcatgaatat
ctgtaccacgttatggacgcgccggaagtgcccgatgcggaatatgaccgcctgatgcgc
gagctgcgcgagctggagagtcaacatccggagctgattaccccggactcgccgactcag
cgggtgggggcggcgccactgactgccttcagccagatccgccatgaagtgccgatgctg
tcgctggacaacgtgtttgatgaagagagctttctcgctttcaacaagcgggtccaggat
cgcctgaaaagcactgacgatctcacctactgctgcgagcttaagctcgacggcctcgcg
gtgagtattctctacgaaaacggcgtactgatgcaggccgcgacccgcggcgacggtacc
accggcgaggatattacctccaatgtgcgaaccattcgcactatccccctcaagctgcat
ggcgagaatatcccggcacgtcttgaggtgcgtggtgaggttttccttccgcaggccggg
tttgaaaaaatcaatgaagaagcgcgccgcaccggcggaaaagtgtttgctaacccgcgt
aatgcggcggcgggttcgctgcgccagctcgatccgcgcatcacggcgaagcgaccgctt
actttcttctgctacggcgttggcgtgctggagggcggtgagctgccggccagccactcg
gcccgtttgcagcagttcaaagcatggggactgccggtgagcgatcgcgtcaccctgtgc
catactcccgaggaagtgctcacttactatcgtaaagtcgaggaagatcgtcctcatctg
ggctttgacattgatggcgtggtgatcaaagtcgattcgctggcgctgcaggagcagttg
ggttttgtggcccgcgcgccgcgctgggccgtggcctttaagttcccggcacaggagcag
atgactttcgtccgggatgtggagttccaggtagggcgcaccggggcgatcacgccagtg
gcgcgcctggagccggtccatgtcgccggcgtgctggtgagcaatgccaccctgcataac
gccgatgaaatcgaacgcttaggtctgaaaatcggcgacaaggtagtgattcgtcgggca
ggcgatgtgatcccgcaggtggtcaatgtggtgctttccgagcgtccggcggatgcccgg
gatgttgtcttcccgacccactgcccggtatgtcagtccgacgttgagcgagtggagggc
gaggcggtagcccgctgtacgggcggccttatctgcggcgcgcagcgtaaagagtcgctt
aagcacttcgtctcccgtcgtgcgctcgacgttgacggcatgggcgacaagatcatcgac
cagctggtggagaaagagtatgtccatacgccggcggatctgttccgcctgagcgccggg
aaactcaccgggctggatcggatggggccgaagtccgcgcaaaatgtggtcaatgctttg
gaaaaagccaaagagacgaccttcgcacgcttcctctacgctctgggtattcgcgaggta
ggcgaagcgacagcggcggccctggcggcgcatttcggcactcttgaagccctggagcag
gcttccattgaggagctgcaaaaggtccctgatgttggcatcgtggttgccacccatacc
ttcaacttctttgccgaagagagtaaccgcgatgtcatcgcgcagctgctggccgaaggc
gttcactggccggcgccagtcgtggtgaaggcggaagagattgatagcccgtttgcgggt
aaaaccgtggtcctgaccggcagcctgagtcagctatcgcgggatgacgccaaagcgcgt
ctcgtcgcgctgggggcgaaggtggcaggcagtgtgtcgaagaaaactgacctggtgatt
gccggcgaagcggcgggttctaagctggcgaaagcgcaggagctgggcattgaggtgatt
gacgaagccgaaatgatgcgtctgctgggagaataa
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