Kocuria palustris: KPaMU14_08875
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Entry
KPaMU14_08875 CDS
T04045
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpl
Kocuria palustris
Pathway
kpl03030
DNA replication
kpl03410
Base excision repair
kpl03420
Nucleotide excision repair
kpl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KPaMU14_08875
03410 Base excision repair
KPaMU14_08875
03420 Nucleotide excision repair
KPaMU14_08875
03430 Mismatch repair
KPaMU14_08875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpl03032
]
KPaMU14_08875
03400 DNA repair and recombination proteins [BR:
kpl03400
]
KPaMU14_08875
Enzymes [BR:
kpl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KPaMU14_08875
DNA replication proteins [BR:
kpl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KPaMU14_08875
DNA repair and recombination proteins [BR:
kpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KPaMU14_08875
NER (nucleotide excision repair)
GGR (global genome repair) factors
KPaMU14_08875
MMR (mismatch excision repair)
DNA ligase
KPaMU14_08875
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KPaMU14_08875
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Zn_ribbon_TFIIB
DUF8512
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ALB04433
LinkDB
All DBs
Position
complement(2023879..2026083)
Genome browser
AA seq
734 aa
AA seq
DB search
MSAEEIPADALREEYAELVERVRQARVEYYQQDAPTVSDAQYDQDYRRLEELESLHPELQ
SNDSPTQEVGGEPSAAFAPVRHLERMYSLEDVFSIDELRAWLERAETQVQTLHGAAELRW
LTEVKIDGLAINLLYQDGRLVRAATRGDGTTGEDVTHNVATISTIPQQLRGEDLPQQIEI
RGEIFISTQDFQKVNEQRVEEGKAPFANPRNAAAGSLRQKDPAETAKRPLSMYVHGIGAA
EGLQISAQSEAYDLMAAWGLPVSPYSQVLSSIDQVVAYIDEYGDKRHSLDHGIDGIVVKV
DDRATQRQLGHTSRTPRWSVAYKYPPEEVHTKLLDIRVGVGRTGRVTPYGVMEPALVAGS
MVEMATLHNQDVVRAKGVLIGDTVVLRKAGDVIPEIVGPVVALRDGTEREFVMPTHCPSC
GTELRPAKEGDVDIRCPNARSCPDQLKERVFHAAGRGAFDIEALGEEAAVALTRPAEPAD
PPLTSEAQLFDLSAGMLKDVKIERQKRGAGAEPGDTELVPYFWTKGSAKHPSKPSANTVK
LFDELAKATSQPLWRVLVALSIRHVGPTAARSLATAFGSMDRIREASEEDLAATDGVGPV
IAREVIDWFQVDWHREIVESWAAAGVRMEDEVDDSVPKVLEGLTIVVTGTLEDYSRDSAK
EAILTRGGKASGSVSKKTDFLVAGASAGSKLEKAESLGVTVLDEADFTRLLAEGPEAFQA
PSGDAEETEVHEGD
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcggaggagatcccggcggacgccctgcgggaggagtacgccgagctcgtggag
cgcgtgcgccaggcgcgggtcgagtactaccagcaggatgcccccaccgtctcggatgcc
cagtacgaccaggactaccggcgcctcgaggagctcgagtccctgcacccggagctgcag
tcgaacgactcgcccacgcaggaggtcggcggcgagccctcggcggccttcgccccggtg
cgccatctcgagcggatgtactcgctcgaggacgtgttctccatcgacgagctgcgcgcc
tggctggagcgcgccgagacccaggtccagaccctgcacggggccgccgagctgcgctgg
ctcaccgaggtcaagatcgacggcctggccatcaacctgctctaccaggacggccgcctg
gtccgggcggccacccgcggcgacggcaccaccggcgaggacgtgacccacaacgtcgcc
accatctccaccatcccgcagcagctgcgcggtgaggacctcccgcagcagatcgagatc
cgcggcgagatcttcatctccacccaggacttccagaaggtcaatgagcagcgcgtggag
gaggggaaggccccgttcgccaacccgcgcaacgcggccgccggctccctgcgccagaag
gatccggcggagacggccaagcgcccgctgtccatgtacgtccacggcatcggcgccgcc
gagggcctgcagatcagcgcccagtcggaggcctacgacctcatggccgcctgggggctg
cccgtcagcccgtactcgcaggtgctcagcagcatcgatcaggtcgtggcatacatcgac
gagtacggcgacaagcgccactccctggatcacggcatcgacggcatcgtcgtgaaggtc
gacgaccgcgccacgcagcgccagctcggacacacctcccgcacgccgcgctggtcggtg
gcctacaagtatccgccggaggaggtccacaccaagctgctggacatccgcgtgggcgtg
ggccgcaccgggcgcgtgaccccgtacggcgtgatggagccggccctcgtcgccggctcc
atggtggagatggccacgctgcacaaccaggacgtcgtgcgggccaagggcgtgctgatc
ggggacaccgtcgttctgcgcaaggcaggagacgtcatcccggagatcgtcgggcccgtc
gtcgccctgcgcgacggcaccgagcgcgagttcgtgatgcccacccactgcccgtcgtgc
ggcaccgagctgcgcccggcgaaggagggcgacgtcgacatccgctgccccaacgcgcgc
tcgtgcccggatcagctcaaggagcgggtcttccacgcggccggtcgcggcgccttcgac
atcgaggcgctgggggaggaggccgccgtggcgctgacgcgtcccgccgagcccgccgat
ccgccgctgacctcggaggcccagctcttcgatctctccgccgggatgctgaaggacgtg
aagatcgagcggcagaagcgcggcgcgggggccgagccgggagacaccgagctcgtgccg
tacttctggaccaagggcagcgccaagcacccgtccaagcccagcgccaacacggtcaag
ctcttcgacgagctcgccaaggccacctcccagccgctgtggcgcgtgctcgtggcgctg
tccatccggcacgtgggccccacggcggcgcgctcgctggccacggccttcggctccatg
gaccggatccgcgaggcctcggaggaggatctggccgccacggacggcgtgggcccggtg
atcgcacgagaggtcatcgactggttccaggtggactggcaccgcgagatcgtcgagtcc
tgggccgctgcgggcgtgcgcatggaggacgaggtcgacgactccgttcccaaggtcctc
gagggcctgaccatcgtggtgaccggcacgctcgaggactactcccgcgactccgccaag
gaggcgatcctcacccgcggcggcaaggcctcggggtccgtgtccaagaagaccgacttc
ctggtggccggcgcctcggcaggatccaagctggagaaggccgagtcgctgggggtcacg
gtgctggacgaggccgacttcacgcggctgctcgcggagggcccggaggccttccaagcg
ccttccggggacgcagaggagaccgaagtccatgaaggcgactga
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