Klebsiella pneumoniae subsp. pneumoniae HS11286: KPHS_38240
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Entry
KPHS_38240 CDS
T01733
Name
(RefSeq) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpm
Klebsiella pneumoniae subsp. pneumoniae HS11286
Pathway
kpm03030
DNA replication
kpm03410
Base excision repair
kpm03420
Nucleotide excision repair
kpm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KPHS_38240
03410 Base excision repair
KPHS_38240
03420 Nucleotide excision repair
KPHS_38240
03430 Mismatch repair
KPHS_38240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpm03032
]
KPHS_38240
03400 DNA repair and recombination proteins [BR:
kpm03400
]
KPHS_38240
Enzymes [BR:
kpm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KPHS_38240
DNA replication proteins [BR:
kpm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KPHS_38240
DNA repair and recombination proteins [BR:
kpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KPHS_38240
NER (nucleotide excision repair)
GGR (global genome repair) factors
KPHS_38240
MMR (mismatch excision repair)
DNA ligase
KPHS_38240
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KPHS_38240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
5_3_exonuc
Prok-E2_C
DZR_2
DUF2229
Motif
Other DBs
NCBI-GeneID:
11848863
NCBI-ProteinID:
YP_005228124
UniProt:
A0A0H3GVW8
LinkDB
All DBs
Position
complement(3859274..3861289)
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQ
RVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDHLTYCCELKLDGLA
VSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHS
ARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQ
ATIEELQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaatcgaacaacaactgactgaactgcgaaccacgcttcgccatcatgaatat
ctgtaccacgttatggacgcgccggaagtgccggatgcggaatatgaccgcctgatgcgc
aagctgcgcgagctggagagccagcacccggagctgattaccccggattcgccaactcag
agggtgggggcggcgccactcaccgcctttagccagatccgccatgaagtgccgatgctg
tcgctggataacgtgtttgacgaagagagctttctcgccttcaacaagcgggtacaggat
cgcctgaaaagcacagatcatcttacctactgctgcgagcttaagctcgacggcctcgcg
gtgagcattctctacgaaaacggcgtgttggtgcaggcggcaacccgcggcgacggcacc
actggcgaagatattacctctaacgtgcgaactattcgcgccatccccctcaagctgcat
ggcgagaatattcctgcacgccttgaggtacgtggggaagtgttcctcccgcaggccggg
tttgaaaaaatcaatgaggaagctcgccgcaccggcgggaaagtgtttgctaacccgcgt
aatgcggcagcgggttcgctgcgccagctcgatccgcgcatcactgcgaagcgaccgctt
actttcttctgctacggcgtgggcgtgctggagggcggcgagctgccggccagccactcg
gctcggttgctgcagttcaaagcatgggggctgccggtgagcgatcgcgtcaccctgtgc
cacacccccgaggaagtgcttacttactatcgtaaagtcgaggaagagcgtccccacctg
ggctttgacattgatggcgtggtgatcaaagtcgattcgctggcgctgcaggaacagctg
ggtttcgtcgcccgcgcgccgcgctgggccgtggcctttaagttcccggcacaggagcag
atgaccttcgtccgggacgtggagttccaggtgggccgcaccggggcgattacgccggtg
gcgcgtctggagccggtccatgttgccggcgtgttggtgagcaatgccaccctgcataat
gccgatgaaattgaacgcttaggcttgaaaatcggcgacaaggtggtgattcgccgggca
ggcgatgtgatcccgcaggtggttaacgtggtgctttccgagcgtccggcggatgcccgg
gatgtcgtcttcccgacccactgtcctgtatgtcagtcagacgttgaacgggtggaaggc
gaggcggtagcccgctgtacgggcggcctgatctgcggcgcgcagcgcaaagagtcgctc
aagcacttcgtctcccgtcgcgcgctcgacgttgacggcatgggcgacaagatcatcgac
cagctggtggagaaagagtacgtccataccccggcggatctgttccggctgacggcgggg
aaactgaccgggctggatcggatggggccgaagtccgcgcaaaacgtagtcaacgccctc
gagaaagccaaagagacgaccttcgcacgtttcctctacgccttaggtattcgcgaggta
ggagaagcgacggcggcgggcctggcggcgcatttcggcactctcgaagcccttgagcag
gctaccattgaggagctacagaaagtccctgatgtcggcatcgtcgtcgctacccatacc
ttcaacttctttgccgaagagagcaaccgcgatgtcattgcgcaactgctggcggagggg
gttcgctggcctgcgccggtggtggtgaaggcggaagagattgatagcccgtttgcaggc
aaaaccgtggtccttaccggcagcctcagccagctgtcgcgcgatgacgccaaagcgcgt
ctggtggcgctgggggcgaaggtggcaggcagcgtgtcgaagaaaaccgacctggtgatt
gccggcgaagcggcggggtctaagctggcgaaagcgcaggagctgggcatcgaggtgatt
gacgaggccgaaatgatgcgtctgctgggagaataa
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