Klebsiella pneumoniae Kp52.145: BN49_0112
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Entry
BN49_0112 CDS
T05281
Symbol
ligB
Name
(GenBank) highly similar to DNA ligase B from Klebsiella pneumoniae subsp. pneumoniae strain ATCC 700721 - MGH 78578 (sp|A6TFP6)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpnk
Klebsiella pneumoniae Kp52.145
Pathway
kpnk03030
DNA replication
kpnk03410
Base excision repair
kpnk03420
Nucleotide excision repair
kpnk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpnk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BN49_0112 (ligB)
03410 Base excision repair
BN49_0112 (ligB)
03420 Nucleotide excision repair
BN49_0112 (ligB)
03430 Mismatch repair
BN49_0112 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpnk03032
]
BN49_0112 (ligB)
03400 DNA repair and recombination proteins [BR:
kpnk03400
]
BN49_0112 (ligB)
Enzymes [BR:
kpnk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BN49_0112 (ligB)
DNA replication proteins [BR:
kpnk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BN49_0112 (ligB)
DNA repair and recombination proteins [BR:
kpnk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BN49_0112 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BN49_0112 (ligB)
MMR (mismatch excision repair)
DNA ligase
BN49_0112 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BN49_0112 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH
RNA_ligase
DUF3701
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
CDO11880
LinkDB
All DBs
Position
118620..120314
Genome browser
AA seq
564 aa
AA seq
DB search
MEEGTAMRKGGWWLALGMFSASVLATCPDWPPARGRQETSRLHQQIVAWKEAYWRQGASG
VSDDVYDQLTLRLAQWRQCFPGATPEDDDLPPPTGDARHPVAHTGVRKLADEDSVARWMK
NKSDLWIQPKVDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALEKVMTGELAD
SVLQGELFLRRDGHVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRR
RQKLLAQAGFKYSGQYTHPVSRIEQVAQWRQRWYRSPLPFVSDGVIVREGREPPGRVWSP
GKGEWLAAWKYPPASRVMQVRAIRFSIGRSGRLNVVAELEPQRLDDKRVQRVNVGSVSRW
QMLDIGVGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALTCYFATHECSEQFL
SRLIWLSSKSALNVDGVGENLWRVIQQQNPMTHIFSWLALTVEQLQAVPGISAARGQHLW
HQFDLVRKRPFIRWVLAMGIPVPQGALAQLESENWHLLAAKSEAQWRTLPGVGEIRARQL
VAFLHHPDVVALAQWLSGQRIPGF
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggggactgcaatgcgtaaaggagggtggtggctggcgttagggatgttctct
gccagcgtgctggcgacgtgtccggactggccgccggccagaggaaggcaggagacatca
cgccttcatcagcaaattgtcgcctggaaagaggcttactggcggcagggcgccagcgga
gtgagcgatgacgtttacgaccagctcaccctgcgcctggcgcagtggcgacaatgcttt
ccgggcgcgacgcctgaggatgacgatctgcctccgcccaccggcgatgcgcgtcatccg
gtggcccataccggcgtgcgcaagctggcggatgaggacagcgttgcccgctggatgaaa
aataaatccgacctgtggatacagcctaaagtggacggcgtggcggtgactctcgtttat
cgccaggggcgtctggttcaggccattagccgcggcgatggtctacgcggtgaggcatgg
accgcccgagcccggcagatcccggcgctggagaaagtgatgaccggtgaactggccgac
agcgtactgcagggggaactgtttctgcgccgggacggccatgtccagcagcaggccggg
gggatgaatgcgcgggcgaaagtcgccgggttgatgatgcgagccgacgcggcggcggcg
ctcagccaactggacgtctttatctgggcctggccagacggtccgtcggatatgcgccgt
cgtcagaagctgctggcgcaggcggggtttaagtacagcggacaatatacccatccggtg
tcgcgcatcgagcaggtggcgcagtggcgccagcgctggtatcgctcgccgctgcccttc
gtcagcgacggtgtgattgtgcgcgaaggacgcgagccgccggggcgagtctggtcgccc
ggaaagggcgagtggctggcagcctggaaatatcctccggcatcgcgggtgatgcaggta
cgggcgatccgtttcagtatcggccgcagcggcagactcaacgtggtggccgagcttgag
ccccagcggctggatgataaacgcgtgcagcgggttaacgttggctctgtgtcccgctgg
cagatgctggatattggggttggcgatcagctgcagatcagtctggcagggcagggtatt
cctcgggtcgacgccgtcgtctggcggacggccgagcgccataaaccgacgccgccgccg
gcgaaatttaatgcgctaacctgctatttcgccacccatgagtgcagcgaacagtttctt
tccaggctgatctggttgtcatcaaagtccgccctgaatgtcgatggcgtgggggaaaat
ttatggcgcgtcattcagcagcaaaacccgatgacgcatatcttttcctggctggcgctt
accgttgagcagctgcaggcggtgccagggatttccgccgcccgcgggcagcacctctgg
catcagtttgatcttgttcgcaaacgaccttttatccgctgggtgctggcgatggggatc
ccggtgccgcagggggcgctggcgcagctcgaaagcgagaactggcatctgctggcggca
aaaagtgaagcgcaatggcgcacgctgccgggcgtaggggagatcagagcccgccagctg
gtggctttcctgcaccatccggacgtggtggcgctggcgcaatggcttagcgggcagcgc
atccccggattttaa
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