Klebsiella pneumoniae subsp. pneumoniae 1084 (serotype K1): A79E_1343
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Entry
A79E_1343 CDS
T02213
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpp
Klebsiella pneumoniae subsp. pneumoniae 1084 (serotype K1)
Pathway
kpp03030
DNA replication
kpp03410
Base excision repair
kpp03420
Nucleotide excision repair
kpp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A79E_1343
03410 Base excision repair
A79E_1343
03420 Nucleotide excision repair
A79E_1343
03430 Mismatch repair
A79E_1343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpp03032
]
A79E_1343
03400 DNA repair and recombination proteins [BR:
kpp03400
]
A79E_1343
Enzymes [BR:
kpp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A79E_1343
DNA replication proteins [BR:
kpp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A79E_1343
DNA repair and recombination proteins [BR:
kpp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A79E_1343
NER (nucleotide excision repair)
GGR (global genome repair) factors
A79E_1343
MMR (mismatch excision repair)
DNA ligase
A79E_1343
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A79E_1343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
RNA_ligase
Prok-E2_C
DZR_2
DUF2229
Motif
Other DBs
NCBI-ProteinID:
AFQ64703
LinkDB
All DBs
Position
1383650..1385665
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQ
RVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDHLTYCCELKLDGLA
VSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHS
ARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQ
ATIEELQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAG
KTVVLTGSLSQLSRDDAKERLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaatcgaacaacaactgactgaactgcgaaccacgcttcgccatcatgaatat
ctgtaccacgttatggacgcgccggaagtgccggatgcggaatatgaccgcctgatgcgc
aagctgcgcgagctggagagccagcacccggagctgattaccccggattcgccaactcag
agggtgggggcggcgccactcaccgcctttagccagatccgccatgaagtgccgatgctg
tcgctggataacgtgtttgacgaagagagctttctcgccttcaacaagcgggtacaggat
cgcctgaaaagcacagatcatcttacctactgctgcgagcttaagctcgacggcctcgcg
gtgagcattctctatgaaaacggcgtgttggtgcaggcggcaacccgcggcgacggcacc
accggcgaagatattacctctaatgtgcgaactattcgcgctatccccctcaagctgcat
ggcgagaatattcctgcacgccttgaggtacgtggggaagtgttcctcccgcaggccggg
tttgaaaaaatcaatgaggaagctcgccgcaccggcgggaaagtgtttgctaacccgcgt
aatgcggcagcgggttcgctgcgccagctcgatccgcgcatcactgcgaagcgaccgctt
actttcttctgctacggcgtgggcgtgctggagggcggcgagctgccggccagccactcg
gctcggttgctgcagttcaaagcatgggggctgccggtgagcgatcgcgtcaccctgtgc
catacccccgaggaagtgcttacttactatcgtaaagtcgaggaagagcgtccccacctg
ggctttgacattgatggcgtggtgatcaaagtcgattcgctggcgctgcaggaacagctg
ggtttcgtcgcccgcgcgccgcgctgggccgtggcctttaagttcccggcacaggagcag
atgaccttcgtccgggacgtggagttccaggtgggccgcaccggggcgattacgccggtg
gcgcgtctggagccggtccatgttgccggcgtgttggtgagcaatgccaccctgcataat
gccgatgaaattgaacgcttaggcttgaaaatcggcgacaaggtggtgattcgccgggca
ggcgatgtgatcccgcaggtggttaacgtggtgctttccgagcgtccggcggatgcccgg
gatgtcgtcttcccgacccactgtcctgtatgtcagtcagacgttgaacgggtggaaggc
gaggcggtagcccgctgtacgggcggcctgatctgcggcgcgcagcgcaaagagtcgctc
aagcacttcgtctcccgtcgcgcgctcgacgttgacggcatgggcgacaagatcatcgac
cagctggtggagaaagagtacgtccataccccggcggatctgttccggctgacggcgggg
aaactgaccgggctggagcggatggggccgaagtccgcgcaaaacgtagtcaacgccctc
gagaaagccaaagagacgaccttcgcacgtttcctctacgccttaggtattcgcgaggta
ggagaagcgacggcggcgggcctggcggcgcatttcggcactctcgaagcccttgagcag
gctaccattgaggagctacagaaagtccctgatgtcggcatcgtcgtcgctacccatacc
ttcaacttctttgccgaagagagcaaccgcgatgtcattgcgcaactgctggcggagggg
gttcgctggcctgcgccggtggtggtgaaggcggaagagattgatagcccgtttgcaggc
aaaaccgtggtccttaccggcagcctcagccagctgtcgcgcgatgacgccaaagagcgt
ctggtggcgctgggggcgaaggtggcaggcagcgtgtcgaagaaaaccgacctggtgatt
gccggcgaagcggcggggtctaagctggcgaaagcgcaggagctgggcatcgaggtgatt
gacgaagccgaaatgatgcgtctgctgggagaataa
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