Klebsiella pneumoniae subsp. pneumoniae KPR0928: KPR0928_25175
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Entry
KPR0928_25175 CDS
T03371
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpq
Klebsiella pneumoniae subsp. pneumoniae KPR0928
Pathway
kpq03030
DNA replication
kpq03410
Base excision repair
kpq03420
Nucleotide excision repair
kpq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KPR0928_25175 (ligB)
03410 Base excision repair
KPR0928_25175 (ligB)
03420 Nucleotide excision repair
KPR0928_25175 (ligB)
03430 Mismatch repair
KPR0928_25175 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpq03032
]
KPR0928_25175 (ligB)
03400 DNA repair and recombination proteins [BR:
kpq03400
]
KPR0928_25175 (ligB)
Enzymes [BR:
kpq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KPR0928_25175 (ligB)
DNA replication proteins [BR:
kpq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KPR0928_25175 (ligB)
DNA repair and recombination proteins [BR:
kpq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KPR0928_25175 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KPR0928_25175 (ligB)
MMR (mismatch excision repair)
DNA ligase
KPR0928_25175 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KPR0928_25175 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
HHH
RNA_ligase
DUF3701
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AIE30855
LinkDB
All DBs
Position
complement(5154125..5155801)
Genome browser
AA seq
558 aa
AA seq
DB search
MRKGGWWLALGMFSASALATCPDWPPARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVY
DQLTLRLAQWRQCFPGATPEDDDLPPPTGDARHPVAHTGVRKLADEDSVARWMKNKSDLW
IQPKVDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALEKVMTGELADSVLQGE
LFLRRGGHVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLLT
QAGFKYSGQYTHPVSSIEQVAQWRQRWYRSPLPFVSDGVIVREGREPPGRVWSPGKGEWL
AAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKRVQRVNVGSVSRWQMLDIG
VGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALTCYFATPECSEQFLSRLIWL
SSKSALNVDGVGENLWRVIQQQNPMTHIFSWLALTVEQLQAVPGISAARGQHLWHQFDLV
RKRPFIRWVLAMGIPVPQGALAQLESENWHLLAAKSEAQWRTLPGVGEIRARQLVAFLHH
PDVVALAQWLSGQRIPGF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaggagggtggtggctggcgttagggatgttctctgccagcgcgctggcgacg
tgtccggactggccgccggccagaggaaggcaggagacatcacgccttcatcagcaaatt
gtcgcctggaaagaggcttactggcggcagggcgccagcggagtgagcgatgacgtttac
gaccagctcaccctgcgcctggcgcagtggcgacaatgctttccgggcgcgacgcctgag
gatgacgatctgcctccgcccaccggcgatgcgcgtcatccggtggcccataccggcgtg
cgcaagctggcggatgaggacagcgttgcccgctggatgaaaaataaatccgacctgtgg
atacagcctaaagtggacggcgtggcggtgactctcgtttatcgccaggggcgtctggtt
caggccattagccgcggcgatggtctgcgcggtgaggcatggaccgcccgagcccggcag
atcccagcgctggagaaagtgatgaccggtgaactggccgacagcgtactgcagggggag
ctgtttctgcgccggggcggccatgttcagcagcaggctggggggatgaacgcgcgggcg
aaagtcgccgggttgatgatgcgagccgacgcggcggcggcgctcagtcaactggacgtt
tttatctgggcctggccagacggcccgtcggatatgcgccgtcgacagcagctgctgacg
caggcggggtttaagtacagcgggcaatatacccacccggtgtcgagcatcgagcaggtg
gcgcagtggcgccagcgctggtatcgctcgccgctgcccttcgtcagcgacggtgtgatt
gtgcgcgaaggacgcgagccgccagggcgagtctggtcgcccggaaagggcgagtggctg
gctgcctggaaatatcctccggcatcgcgggtgatgcaggtacgggcgatccgtttcagt
accggccgcagcggcagactcaacgtggtggccgagcttgagccccagcggctggatgat
aaacgcgtgcagcgggttaacgttggctctgtgtcccgctggcagatgctggatattggg
gttggcgatcagctgcagatcagtctggcagggcagggtattcctcgggtcgacgccgtc
gtctggcggacggccgagcgccataaaccgacgccgccgccggcgaaatttaatgcgcta
acctgctatttcgccacccctgagtgcagcgaacagtttctttccaggctgatctggttg
tcatcaaagtccgccctgaatgtcgatggcgtgggggaaaatttatggcgcgtcattcag
cagcaaaacccgatgacgcatatcttttcctggctggcgcttaccgttgagcagctgcag
gcggtgccagggatttccgccgcccgcgggcagcacctctggcatcagtttgatcttgtt
cgcaaacgaccttttatccgctgggtgctggcgatggggatcccggtgccgcagggggcg
ctggcgcagctcgaaagcgagaactggcatttgctggcggcaaaaagtgaagcgcaatgg
cgcacgctgccgggcgtgggggagatcagagcccgccagctggtggctttcctgcaccat
ccggacgtggtggcgctggcgcaatggcttagcgggcagcgcatccccggattttaa
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