Kosakonia pseudosacchari: IP581_22635
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Entry
IP581_22635 CDS
T06897
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpse
Kosakonia pseudosacchari
Pathway
kpse03030
DNA replication
kpse03410
Base excision repair
kpse03420
Nucleotide excision repair
kpse03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IP581_22635 (ligB)
03410 Base excision repair
IP581_22635 (ligB)
03420 Nucleotide excision repair
IP581_22635 (ligB)
03430 Mismatch repair
IP581_22635 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpse03032
]
IP581_22635 (ligB)
03400 DNA repair and recombination proteins [BR:
kpse03400
]
IP581_22635 (ligB)
Enzymes [BR:
kpse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IP581_22635 (ligB)
DNA replication proteins [BR:
kpse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IP581_22635 (ligB)
DNA repair and recombination proteins [BR:
kpse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IP581_22635 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IP581_22635 (ligB)
MMR (mismatch excision repair)
DNA ligase
IP581_22635 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IP581_22635 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
RNA_ligase
DUF3701
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QOV66431
LinkDB
All DBs
Position
complement(4768397..4770076)
Genome browser
AA seq
559 aa
AA seq
DB search
MWKRTGFAVCLLLWSLSSLAVCPVWSPSRAQDEVSRLQQQLAQWNEHYWKQGASEVSDAV
YDQLSARLAVWQRCFALEPVNSAPVLPGGSVKHPVAHTGVQKLAGKQALQRWMAGKTDLW
AQPKVDGVAVTLIYRNGELAQAISRGDGLAGEDWTAKIRAIPSIPETVSGALANSVLQGE
LFLRTENHIQKQAGGLNARAKVAGAMMRRDESSILNDLAFFVWAWPDGPATLAQKLVELS
KAGFSHEAQYSVPVSTVEDVEKLRSRWFTSELPFVTDGVVVRSGTEPAGNTWLPGQGNWV
VAWKYEPPEEIATVKDIQFAIGRTGKISVVALLEPVQLDDKRVQRVNLGSVRRWQELDVA
PGDQIAISLAGQGIPRIDSVAWRSLVRDKPVPPAPRFTPLTCFYASAECQEQFIARLVWL
SSPKALGVEGLGESGWRGLNQAHHFEHLFSWLALTKEQLQSTPGISPERGLQLWHRFSLV
REKPLIRWLIALGAPLPQPALKVTADTTWQQMRTRNEKEWQRFPAIGAEKARQIVAFMHA
SEIKKLSAWLSEQGIKAFQ
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaaagaaccggattcgcggtatgtctgttgctatggagcctgtccagcctggcg
gtgtgtcctgtctggtcgccctcaagagcgcaagatgaagtaagccgtcttcaacagcag
cttgcccaatggaatgagcactactggaagcagggagcaagcgaggtcagtgacgcggtt
tacgaccagctcagcgcacggctggcagtctggcaacgctgttttgcacttgaacccgta
aattcagcacctgtcttacccggcggcagtgtgaaacatcctgtcgcacatacgggtgta
caaaaactggcgggtaagcaagcgctacagcgctggatggcgggaaaaaccgatctttgg
gcgcaaccaaaagtggatggcgtcgcggtgacgttaatctatcgcaatggtgaactggcg
caggcgatcagtcgcggcgatgggctggcgggcgaagactggacggcaaaaatacgcgct
atcccatcgattcctgaaacggtgagtggcgcgctggcaaatagcgtattgcagggtgaa
ctgtttttacgcacagaaaaccatattcagaaacaggccggtggacttaacgcccgcgca
aaagttgccggtgcgatgatgcgtcgcgatgagtcctctattctcaatgatctggcgttt
ttcgtctgggcatggccagacggcccggcaacgctggcgcaaaagctggtggaactcagc
aaagctggatttagtcatgaagcgcaatatagcgtgccagtgagtacggtagaagatgtg
gaaaaactgcgtagccgttggtttacctctgaattacctttcgtcaccgatggcgtggtg
gtgcgttcgggaaccgaaccggcgggaaatacctggctaccggggcagggcaattgggtg
gtggcatggaaatatgaaccacccgaagaaattgcaaccgtaaaagatattcagtttgcc
attggacgtaccggtaaaatttccgtggtggctctgctggaaccggtacaactcgatgac
aagcgtgttcagcgggtcaatttgggttcagtcagacgttggcaagagctggatgttgcg
cctggcgatcaaatcgctatcagccttgcaggtcaagggatcccgcgcatcgacagcgtg
gcgtggcgttcacttgttcgcgataaacccgtcccacctgcgcctcgttttactccgttg
acctgtttttatgcctcagcggaatgtcaggagcaatttattgcccgcctggtgtggctc
agctcaccaaaagcgctgggagttgaagggcttggcgaaagcggctggcggggtttaaat
caggcgcatcactttgaacatcttttttcatggctggcgctgacaaaagagcaattacag
tcgacgcctggcatttcgccggaacgcggtttacagctctggcatcgcttttcgctggta
cgagaaaaaccgcttattcgttggctaattgcactgggagcaccgctgccgcagcctgcg
ctgaaagtcactgctgatacaacatggcagcaaatgcgcacgcgtaatgaaaaggagtgg
cagcgttttccggcaattggtgctgaaaaagcccggcagatcgttgcctttatgcatgcc
tccgaaattaaaaaactttcggcctggttgagtgaacaaggaataaaggcatttcagtga
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