Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 KPPR1: VK055_3473
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Entry
VK055_3473 CDS
T03418
Symbol
ligB
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpt
Klebsiella pneumoniae subsp. pneumoniae ATCC 43816 KPPR1
Pathway
kpt03030
DNA replication
kpt03410
Base excision repair
kpt03420
Nucleotide excision repair
kpt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VK055_3473 (ligB)
03410 Base excision repair
VK055_3473 (ligB)
03420 Nucleotide excision repair
VK055_3473 (ligB)
03430 Mismatch repair
VK055_3473 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpt03032
]
VK055_3473 (ligB)
03400 DNA repair and recombination proteins [BR:
kpt03400
]
VK055_3473 (ligB)
Enzymes [BR:
kpt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VK055_3473 (ligB)
DNA replication proteins [BR:
kpt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VK055_3473 (ligB)
DNA repair and recombination proteins [BR:
kpt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VK055_3473 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VK055_3473 (ligB)
MMR (mismatch excision repair)
DNA ligase
VK055_3473 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VK055_3473 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH
RNA_ligase
DUF3701
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AIK82029
LinkDB
All DBs
Position
3568782..3570458
Genome browser
AA seq
558 aa
AA seq
DB search
MRKGGWWLALGMFSASALATCPDWPPARGRQETSRLHQQIVAWKEAYWRQGASGVSDDVY
DQLTLRLAQWRQCFPGATPEDDDLPPPTGDARHPVAHTGVRKLADEDSVARWMKNKSDLW
IQPKVDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELADSVLQGE
LFLRRDGHVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQKLLA
QAGFKYSGQYTHPVSRIEQVAQWRQRWYRSPLPFVSDGVIVREGREPPGRVWSPGKGEWL
AAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKRVQRVNVGSVSRWQMLDIG
VGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALTCYFATPECSEQFLSRLIWL
SSKSALNVDGVGENLWRVIQQQNPMTHIFSWLALTVEQLQAVPGISAARGQHLWHQFDLV
RKRPFIRWVLAMGIPVPQGALAQLESENWHLLAAKSEAQWRTLPGVGEIRARQLVAFLHH
PDVVALAQWLSGQRIPGF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaggagggtggtggctggcgttagggatgttctctgccagcgcgctggcgacg
tgtccggactggccgccggccagaggaagacaggagacatcacgccttcatcagcaaatt
gtcgcctggaaagaggcttactggcggcagggcgccagcggagtgagcgatgacgtttac
gaccagctcaccctacgcctggcgcagtggcgacaatgctttccgggcgcgacgcctgag
gatgacgatctgcctccgcccaccggcgatgcgcgtcatccggtggcccataccggcgtg
cgcaagctggcggatgaggacagcgttgcccgctggatgaaaaataaatccgacctgtgg
atacagcctaaagtggacggcgtggcggtgactctcgtttatcgccaggggcgtctggtt
caggccattagccgcggcgatggtctacgcggtgaggcatggaccgcccgagcgcggcag
atcccggcgctggcgaaagtgatgaccggtgaactggccgacagcgtactgcagggggaa
ctgtttctgcgccgggacggccatgtccagcagcaggccggggggatgaatgcgcgggcg
aaagtcgccgggttgatgatgcgagccgacgcggcggcggcgctcagccaactggacgtc
tttatctgggcctggccagacggcccgtcggatatgcgccgtcgtcagaagctgctggcg
caggcggggtttaagtacagcggacaatatacccatccggtgtcgcgcatcgagcaggtg
gcgcagtggcgccagcgctggtatcgctcgccgctgcccttcgtcagcgacggtgtgatt
gtgcgcgaaggacgcgagccgccggggcgagtctggtcgcccggaaagggcgagtggctg
gcagcctggaaatatcctccggcatcgcgggtgatgcaggtacgggcgatccgtttcagt
accggccgcagcggcagactcaacgtggtggccgagcttgagccccagcggctggatgat
aaacgcgtgcagcgggttaacgttggctctgtgtcccgctggcagatgctggatattggg
gttggcgatcagctgcagatcagtctggcagggcagggtattcctcgggtcgacgccgtc
gtctggcggacggccgagcgccataaaccgacgccgccgccggcgaaatttaatgcgcta
acctgctatttcgccacccctgagtgcagcgaacagtttctttccaggctgatctggttg
tcatcaaagtccgccctgaatgtcgatggcgtgggggaaaatttatggcgcgtcattcag
cagcaaaacccgatgacgcatatcttttcctggctggcgcttaccgttgagcagctgcag
gcggtgccagggatttccgccgcccgcgggcagcacctctggcatcagtttgatctcgtt
cgcaaacgaccttttatccgctgggtgctggcgatggggatcccggtgccgcagggggcg
ctggcgcagctcgaaagcgagaactggcatctgctggcggcaaaaagtgaagcgcaatgg
cgcacgctgccgggcgtgggggagatcagagcccgccagttggtggctttcctgcaccat
ccggacgtggtggcgctggcgcaatggcttagcgggcagcgcatccccggattttaa
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