Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (serotype K1): KP1_5350
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Entry
KP1_5350 CDS
T00910
Symbol
yicF
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpu
Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044 (serotype K1)
Pathway
kpu03030
DNA replication
kpu03410
Base excision repair
kpu03420
Nucleotide excision repair
kpu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KP1_5350 (yicF)
03410 Base excision repair
KP1_5350 (yicF)
03420 Nucleotide excision repair
KP1_5350 (yicF)
03430 Mismatch repair
KP1_5350 (yicF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpu03032
]
KP1_5350 (yicF)
03400 DNA repair and recombination proteins [BR:
kpu03400
]
KP1_5350 (yicF)
Enzymes [BR:
kpu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KP1_5350 (yicF)
DNA replication proteins [BR:
kpu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KP1_5350 (yicF)
DNA repair and recombination proteins [BR:
kpu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KP1_5350 (yicF)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KP1_5350 (yicF)
MMR (mismatch excision repair)
DNA ligase
KP1_5350 (yicF)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KP1_5350 (yicF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
HHH
RNA_ligase
DUF3701
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
BAH65776
LinkDB
All DBs
Position
complement(5090406..5092103)
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AA seq
565 aa
AA seq
DB search
MMEEGTAMRKGGWWLALGMFSASALATCPDWPPARGRQETSRLHQQIVAWKEAYWRQGAS
GVSDDVYDQLTLRLAQWRQCFPGATPEDDDLPPPTGDARHPVAHTGVRKLADEDSVARWM
KNKSDLWIQPKVDGVAVTLVYRQGRLVQAISRGDGLRGEAWTARARQIPALAKVMTGELA
DSVLQGELFLRRDGHVQQRAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMR
RRQQLLAQAGFKYSGQYTHPVSRIEQVAQWRQRWYRSPLPFVSDGVIVREGREPPGRVWS
PGKGEWLAAWKYPPASRVMQVRAIRFSTGRSGRLNVVAELEPQRLDDKRVQRVNVGSVSR
WQMLDIGVGDQLQISLAGQGIPRVDAVVWRTAERHKPTPPPAKFNALTCYFATPECSEQF
LSRLIWLSSKSALNVDGVGENLWRVIQQQNPMTHIFSWLALTVEQLQALPGISAARGQHL
WHQFDLVRKRPFIRWVLAMGIPVPQGALAQLESENWHLLAAKSEAQWRTLPGVGEIRARQ
LVAFLHHPDVVALAQWLSGQRIPGF
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
gtgatggaggaggggactgcaatgcgtaaaggagggtggtggctggcgttagggatgttc
tctgccagcgcgctggcgacgtgtccggactggccgccggccagaggaaggcaggagaca
tcacgccttcatcagcaaattgtcgcctggaaagaggcttactggcggcagggcgccagc
ggagtgagcgatgacgtttacgaccagctcaccctgcgcctggcgcagtggcgacaatgc
tttccgggcgcgacgcctgaggatgacgatctgcctccgcccaccggcgatgcgcgtcat
ccggtggcccataccggcgtgcgcaagctggcggatgaggacagcgttgcccgctggatg
aaaaataaatccgacctgtggatacagcctaaagtggacggcgtggcggtgactctcgtt
tatcgccaggggcgtctggttcaggccattagccgcggcgatggtctacgcggtgaggca
tggaccgcccgagcgcggcagatcccggcgctggcgaaagtgatgaccggtgaactggcc
gacagcgtactgcagggggaactgtttctgcgccgggacggccatgtccagcagcgggcc
ggggggatgaatgcgcgggcgaaagtcgccgggttgatgatgcgagccgacgcggcggcg
gcgctcagtcaactggacgtttttatctgggcctggccagacggcccgtcggatatgcgc
cgtcgtcagcagctgctggcgcaggcggggtttaagtacagcggacaatatacccatccg
gtgtcgcgcatcgagcaggtggcgcagtggcgccagcgctggtatcgctcgccgctgccc
ttcgtcagcgacggtgtgattgtgcgcgaaggacgcgagccgccgggacgagtctggtcg
cccggaaagggcgagtggctggcagcctggaaatatcctccggcatcgcgggtgatgcag
gtacgggcgatccgtttcagtaccggccgcagcggcagactcaacgtggtggccgagctt
gagccccagcggctggatgataaacgcgtgcagcgggttaacgttggctctgtgtcccgc
tggcagatgctggatattggggttggcgatcagctgcagatcagtctggcagggcagggt
attcctcgggtcgacgccgtcgtctggcggacggccgagcgccataaaccgacgccgccg
ccggcgaaatttaatgcgctaacctgctatttcgccacccctgagtgcagcgaacagttt
ctttccaggctgatctggttgtcatcaaagtccgccctgaatgtcgatggcgtgggggaa
aatttatggcgcgtcattcagcagcaaaacccgatgacgcatatcttttcttggctggcg
cttaccgttgagcagctgcaggcgttgccagggatttccgccgcccgcgggcagcacctc
tggcatcagtttgatctcgttcgcaaacgaccttttatccgctgggtgctggcgatgggg
atcccggtgccgcagggggcgctggcgcagctcgaaagcgagaactggcatttgctggcg
gcaaaaagtgaagcgcaatggcgcacgctgccgggcgtgggggagatcagagcccgccag
ctggtggctttcctgcaccatccggacgtggtggcgctggcgcaatggcttagcgggcag
cgcatccccggattttaa
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