Klebsiella pneumoniae subsp. pneumoniae KPNIH27: KPNIH27_18300
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Entry
KPNIH27_18300 CDS
T03370
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kpz
Klebsiella pneumoniae subsp. pneumoniae KPNIH27
Pathway
kpz03030
DNA replication
kpz03410
Base excision repair
kpz03420
Nucleotide excision repair
kpz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kpz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KPNIH27_18300 (ligA)
03410 Base excision repair
KPNIH27_18300 (ligA)
03420 Nucleotide excision repair
KPNIH27_18300 (ligA)
03430 Mismatch repair
KPNIH27_18300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kpz03032
]
KPNIH27_18300 (ligA)
03400 DNA repair and recombination proteins [BR:
kpz03400
]
KPNIH27_18300 (ligA)
Enzymes [BR:
kpz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KPNIH27_18300 (ligA)
DNA replication proteins [BR:
kpz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KPNIH27_18300 (ligA)
DNA repair and recombination proteins [BR:
kpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KPNIH27_18300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KPNIH27_18300 (ligA)
MMR (mismatch excision repair)
DNA ligase
KPNIH27_18300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KPNIH27_18300 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
Prok-E2_C
DZR_2
DUF2229
Motif
Other DBs
NCBI-ProteinID:
AIA43199
LinkDB
All DBs
Position
complement(3787990..3790005)
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRKLRELESQHPELITPDSPTQ
RVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDHLTYCCELKLDGLA
VSILYENGVLVQAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHS
ARLLQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEERPHLGFDIDGVVIKVDSLELQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQ
ASIEELQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVRWPAPVVVKAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccaatcgaacaacaactgactgaactgcgaaccacgcttcgccatcatgaatat
ctgtaccacgttatggacgcgccggaagtgccggatgcggaatatgaccgcctgatgcgc
aagctgcgcgagctggagagccagcacccggagctgattaccccggattcgccaacacag
agggtgggggcggcgccactcaccgcctttagccagatccgccatgaagtgccgatgctg
tcgctggataacgtgtttgacgaagagagctttctcgccttcaataagcgggtacaggat
cgcctgaaaagcacagatcatcttacctactgctgcgagcttaagctcgacggcctcgcg
gtgagcattctctacgaaaacggcgtgttggtgcaggcggcaacccgcggcgacggcacc
accggcgaagatattacctctaacgtgcgaactattcgcgccatccccctcaagctgcat
ggcgagaatattcctgcacgccttgaggtacgtggggaagtgttcctcccgcaggccggg
tttgaaaaaatcaatgaggaagctcgccgcaccggcgggaaagtgtttgctaacccgcgt
aatgcggcagcgggttcgctgcgccagctcgatccgcgcatcactgcgaagcgaccgctt
actttcttctgctacggcgtgggcgtgctggagggcggcgagctgccggccagccactcg
gctcggttgctgcagttcaaagcatgggggctgccggtgagcgatcgtgtcaccctgtgc
catacccccgaggaagtgcttacttactatcgtaaagtcgaggaagagcgtccccacctg
ggctttgacattgatggcgtggtgatcaaagtcgattcgctggagctgcaggaacagctg
ggtttcgtcgcccgcgcgccgcgctgggccgtggcctttaagttcccagcacaggagcag
atgaccttcgtccgggacgtggagttccaggtgggccgcaccggggcgattacgccggtg
gcgcgtctggagccggtccatgttgccggcgtgttggtgagcaatgccaccctgcataat
gccgatgaaattgaacgcttaggcttgaaaatcggcgacaaggtggtgattcgccgggca
ggcgatgtgatcccgcaggtggttaacgtggtgctttccgagcgtcctgcggatgcccgg
gatgtcgtcttcccgacccactgtcctgtatgtcagtcagacgttgaacgggtggaaggc
gaggcggtagcccgctgtacgggcggtctgatctgcggcgcgcagcgcaaagagtcgctc
aagcacttcgtctcccgtcgcgcgctcgacgttgacggcatgggcgacaagatcatcgac
caactggtggagaaagagtacgtccataccccggcggatctgttccggctgacggcgggg
aaactgaccgggctggatcgaatggggccgaagtccgcgcaaaacgtagtcaatgccctc
gagaaagccaaagagacgaccttcgcacgcttcctctacgccttaggtattcgcgaggta
ggagaagcgacggcggcgggcctggcggcgcatttcggcactctcgaagccctggagcag
gcttcaattgaggagctacagaaagtccctgatgtcggcatcgtcgtcgctacccatacc
ttcaacttctttgccgaagagagcaaccgcgatgtcattgcgcaactgctggcggagggg
gttcgctggcctgcgccggtggtggtgaaggcggaagagattgatagcccgtttgcaggc
aaaaccgtggtccttaccggcagcctcagccagctgtcgcgcgatgacgccaaagcgcgt
ctggtggcgctgggggcgaaggtggcaggcagcgtgtcgaagaaaaccgacctggtgatt
gccggcgaagcggcggggtctaagctggcgaaagcgcaggagctgggcatcgaggtgatt
gacgaagccgaaatgatgcgtctgctgggagaataa
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