Kribbella qitaiheensis: F1D05_02105
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Entry
F1D05_02105 CDS
T06749
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kqi
Kribbella qitaiheensis
Pathway
kqi03030
DNA replication
kqi03410
Base excision repair
kqi03420
Nucleotide excision repair
kqi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F1D05_02105 (ligA)
03410 Base excision repair
F1D05_02105 (ligA)
03420 Nucleotide excision repair
F1D05_02105 (ligA)
03430 Mismatch repair
F1D05_02105 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kqi03032
]
F1D05_02105 (ligA)
03400 DNA repair and recombination proteins [BR:
kqi03400
]
F1D05_02105 (ligA)
Enzymes [BR:
kqi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F1D05_02105 (ligA)
DNA replication proteins [BR:
kqi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F1D05_02105 (ligA)
DNA repair and recombination proteins [BR:
kqi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F1D05_02105 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F1D05_02105 (ligA)
MMR (mismatch excision repair)
DNA ligase
F1D05_02105 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F1D05_02105 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
RNA_ligase
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
IclR_C
Motif
Other DBs
NCBI-ProteinID:
QNE16913
UniProt:
A0A7G6WSE8
LinkDB
All DBs
Position
complement(458692..460689)
Genome browser
AA seq
665 aa
AA seq
DB search
MDVGERIQELADQIVVLRDAYYRGSPSVADAEYDVIEDELRTLIEANPELAPDPNPLEQV
GAPAVLHAPIRHSRPMLSLEKATRPEQVEAFFSRFPGQSVVVMPKLDGLSLALVYENGKL
ARAITRGDGTTGDDVTPLVRALADGVPDRLDVSGRIEVRGEAVMLRSTFVAYNNTHPDKP
LINPRNAAAGTLRAKDPATVAERRLQFLAFDLLSDADNTDADLDRALQTLGFTAAEMRHC
ADAAAAQAVITTIEQQRNKLDYDLDGAVLRLADRDAFAAAGTRSSSPRGAMAFKFAAEEK
TTVLADVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQEVIRARGIKIGDTVLVRRA
GDVIPFVAGVLDASKRTGEERDIVPPSVCPSCQEPLTEQGNSRELFCTNVACPAQTVRRL
IHWASRAAADIDAIGGVWIERLAEAGILEHPSDFYRLTKEGLLEFDRIGEISAARMIDSI
DTSRQVGLRRALIGLAIPMASEGTATRVCRAGFGSLEEVADAGVDGLVAVEDIGPKVAAS
LIEHLTRLRPELERLRAAGVSLDVREEDLPPVVAAGAPLAGKTVVVTGSINDPRSGEKVA
RPAFQRLCEKAGATIASSVSASTDLLITGADVGAAKLTKAEKFGVTVVDQSEIWQQLQEA
ALLPR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
gtggacgttggggagcggattcaggaactggctgatcagatcgtcgtactacgcgacgcc
tactaccggggttcgccgtcggtggcggacgcggagtacgacgtaatcgaggacgagcta
cggacgctgatcgaggcgaatcccgagctggcgcccgacccgaatccgctggagcaggtc
ggcgcgcccgcggtgctgcacgcgccgatccggcactcgcggccgatgctgtcgctggag
aaggcgacccgccccgaacaggtggaggccttcttcagccgctttcccggccaatcggtg
gtggtgatgccgaagctggacggtctgtcactggccctggtctacgagaacggcaagctg
gcacgggcgatcacccgcggcgacggcacgaccggcgacgacgtgaccccgctcgtacgg
gcattggccgatggagtcccggaccggctcgatgtgtcgggccgcatcgaggtccgcggc
gaggcagtcatgctgcgctccaccttcgttgcctataacaacactcacccggacaagccc
ctgatcaacccgaggaacgccgccgccggcaccctgcgcgcgaaggatccggccactgtt
gccgagcggcgcctccagttcctcgccttcgacctgctcagcgacgccgacaacacggac
gccgatctggatcgcgcgctgcaaacgctcgggttcaccgccgccgagatgcggcattgc
gctgacgccgccgccgcgcaagcggtgatcaccacgatcgagcagcagcgcaacaagctc
gattacgacctggacggcgccgtactgcgactggccgatcgcgacgccttcgcggccgcc
gggacccggtccagctcgccgcgcggcgcgatggcgttcaagttcgccgccgaggagaag
accaccgtgctggccgacgtggtctgggacgtcggcaaaaccggcaagatcgcgccggtc
gcgtggctggagcccgtcttcgtgggtggtacgacggtcacccgcgcgacgctggccaac
caggaagtgatccgtgcccgcggcatcaagatcggcgacacagtgctggtccgccgtgcc
ggggacgtgatcccgttcgtcgccggcgtgctcgatgcctccaagcgcaccggtgaggag
cgagacatcgtcccgccctcggtgtgcccgtcgtgccaggagcccctgaccgagcaaggc
aacagccgcgaactgttctgcaccaatgtggcctgccccgcccagaccgtacggcgactg
atccactgggcgtcccgggctgccgccgacatcgacgccatcggcggggtctggatcgaa
cggctggccgaggcgggaatcctcgagcacccgtcggacttctaccggctgaccaaggaa
gggctgctggagttcgaccgtatcggcgagatctcggcggcccggatgatcgactcgatc
gacacgagtcgtcaggtcggcctccgccgggcgttgatcggcctcgcgatcccgatggcc
tccgaaggcaccgcgaccagggtctgccgagcgggattcggttcgctggaagaggttgcc
gacgcgggcgtcgacgggctcgtcgccgtcgaggacatcgggccgaaggtcgccgcctca
ctgatagagcacctcacccggctgcgccccgagctcgaacgcctccgcgccgccggcgtc
tctctggacgtccgcgaagaagacctcccaccggtcgtcgcggccggcgcaccgctggca
ggcaagacagtggtcgtcaccggctcgatcaacgacccacgctccggcgagaaggtcgcc
cggccagccttccagcgactctgcgagaaggcgggcgcgaccatcgcctcgtccgtctcg
gccagcaccgacctgctcatcaccggcgccgacgtcggcgccgccaaactcaccaaggcc
gagaagttcggcgtcaccgtggtggaccagtccgagatctggcaacaactccaggaagcc
gccctactcccccgctga
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