Klebsiella quasipneumoniae: AVR78_23360
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Entry
AVR78_23360 CDS
T04389
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kqu
Klebsiella quasipneumoniae
Pathway
kqu03030
DNA replication
kqu03410
Base excision repair
kqu03420
Nucleotide excision repair
kqu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AVR78_23360 (ligA)
03410 Base excision repair
AVR78_23360 (ligA)
03420 Nucleotide excision repair
AVR78_23360 (ligA)
03430 Mismatch repair
AVR78_23360 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kqu03032
]
AVR78_23360 (ligA)
03400 DNA repair and recombination proteins [BR:
kqu03400
]
AVR78_23360 (ligA)
Enzymes [BR:
kqu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AVR78_23360 (ligA)
DNA replication proteins [BR:
kqu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AVR78_23360 (ligA)
DNA repair and recombination proteins [BR:
kqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AVR78_23360 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AVR78_23360 (ligA)
MMR (mismatch excision repair)
DNA ligase
AVR78_23360 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AVR78_23360 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
Prok-E2_C
DUF2229
Motif
Other DBs
NCBI-ProteinID:
AMR17094
UniProt:
A0A1C3PL14
LinkDB
All DBs
Position
complement(2365898..2367913)
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELITPDSPTQ
RVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVLDRLKSTDPLIYCCELKLDGLA
VSILYENGVLVQAATRGDGTTGEDITSNVRTIRTIPLRLHGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHS
ARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVEFPTHCPVCQSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEQ
ASIEELQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgatcgaacaacaactgactgaactgcgaaccacgcttcgccatcatgaatac
ctgtaccacgttatggacgcgccggaagtgcccgatgcggagtacgaccggctgatgcgc
gagctgcgcgagctggagagccagcatccggagctgattaccccggattcgccgactcag
cgcgtaggggcggcgccactgaccgccttcagccagatccgccatgaagtgccgatgctg
tcactggacaacgtgtttgacgaagagagctttctggccttcaacaagcgggtgctggat
cgcctgaaaagcactgacccgctcatctactgctgcgagctgaagctcgacggtctcgcg
gtgagcattctctacgaaaacggcgtgctggtgcaggcggcgacccgcggcgacggcacc
accggcgaggatattacctctaacgtgcgaaccatccgcaccatcccgctcaggctgcat
ggcgataatatccccgcacgcctggaggtgcgcggggaagtgttcctcccgcaggccggg
ttcgaaaaaatcaatgaagaagctcgccgcaccggcggaaaagtgtttgctaacccgcgc
aatgcggcggcgggctcgttgcgccagctggacccgcgcatcaccgcgaagcgaccgctt
actttcttctgctacggcgttggggtgctggagggcggtgagctgccggccagccactcg
gcccgtttacagcagttcaaagcatggggattaccggtgagcgatcgcgtcaccctttgc
catacccccgaggaagtgctcacttactatcgtaaagtcgaggaagatcgtccccatctg
ggctttgacattgatggcgtggtgatcaaagtcgattcgctggcgctgcaggaacagctg
ggtttcgtcgcccgcgcgccgcgctgggccgtagcctttaagttcccggcccaggagcag
atgactttcgtccgggacgtggagttccaggtgggccgcaccggggcgattacgccggtg
gcgcgcctggagccggtccatgtcgccggcgtgctggtgagtaatgccactttgcataac
gccgatgagattgaacgcttaggcttgaaaatcggcgacaaggtggtgattcgccgggca
ggcgatgtgatcccgcaggtggtcaacgtggtgctttccgaacgtccggcagatgcccgg
gatgttgaattcccgacccactgcccggtctgtcagtcagacgttgagcgagtggaaggc
gaggcggtagcccgctgtaccggcggccttatctgcggcgcgcagcgcaaagagtcgctc
aagcactttgtctcccgtcgcgcgctggacgttgacggcatgggcgataagatcatcgac
cagctggtggagaaagagtacgttcataccccggcggatctgttccggctgaccgcaggg
aaactgaccgggctggatcggatgggaccgaagtccgcgcaaaacgtggtcaacgctctc
gagaaagccaaagagacaaccttcgcgcgtttcctctacgccttgggcattcgcgaggta
ggagaagccacggcggcaggcctggcggcgcattttggcaccctagaagccctggagcag
gcttccattgaggagctgcagaaggtccctgatgtcggcatcgtcgtcgccacccatact
ttcaacttctttgccgaagagagcaaccgcgatgtcatcgcgcagctgctggcggaaggg
gttcactggccggcgccggtggtggtgaaggcggaagagattgacagcccgtttgcaggc
aaaaccgtcgtcctgaccggcagcctcagtcagttgtcgcgggatgatgccaaagcgcgt
ctggtggcgctgggggcgaaggtggcgggcagcgtgtcgaagaaaaccgatctggtgatt
gcaggcgaagcggcgggttctaagctggcgaaagcgcaggagctcggcatcgaggtgatt
gacgaagccgaaatgatgcgcctgttgggagaataa
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integrated database retrieval system
