Kosakonia radicincitans: A3780_16730
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Entry
A3780_16730 CDS
T04579
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
krd
Kosakonia radicincitans
Pathway
krd03030
DNA replication
krd03410
Base excision repair
krd03420
Nucleotide excision repair
krd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
krd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A3780_16730 (ligA)
03410 Base excision repair
A3780_16730 (ligA)
03420 Nucleotide excision repair
A3780_16730 (ligA)
03430 Mismatch repair
A3780_16730 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
krd03032
]
A3780_16730 (ligA)
03400 DNA repair and recombination proteins [BR:
krd03400
]
A3780_16730 (ligA)
Enzymes [BR:
krd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A3780_16730 (ligA)
DNA replication proteins [BR:
krd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A3780_16730 (ligA)
DNA repair and recombination proteins [BR:
krd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A3780_16730 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A3780_16730 (ligA)
MMR (mismatch excision repair)
DNA ligase
A3780_16730 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A3780_16730 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
APG19124
LinkDB
All DBs
Position
complement(3657140..3659158)
Genome browser
AA seq
672 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAAPLTAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDALTYCCELKLDGLA
VSILYENGVLIRAATRGDGTTGEDITSNVRTIRAIPLKLHGDNIPARLEVRGEVFLPQSG
FEKINEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGILEGGELPRSHM
GRLQQFKAWGLPVSERIRLCDSPEAVLAFYRQVENDRPTLGFDIDGVVIKVDSLELQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIDRLGLRIGDKVVIRRAGDVIPQVVNVVLAERPEETREVIFPQHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVQTPADLFRLTAG
KLTGLDRMGPKSAQNIITALENAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALMA
ASVDELQKVPDVGVVVAKHVNNFFNEESNREVIAQLVGEVGIHWPAPLVVNAEEIDSPFA
GKTVVLTGSLSQLSRDEAKARLTALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAV
IDEAEMIRLLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgattgaacaacaactaacagagctgcgaacgacgcttcgccatcatgaatat
ctgtaccacgttatggacgcgccggaagttccggacgccgagtacgatcgcctgatgcgt
gaattgcgcgagcttgaagcgcaacacccggagctgattacgcccgattcgcccactcag
cgtgtaggcgcggcgccgctgactgccttcagccaggtacgccacgaagtgccaatgctg
tcactggataacgtgttcgacgaggagagcttccttgcctttaacaaacgcgtacaggat
cggttgaaaagcaccgatgcgctgacctactgctgcgagttaaaactcgatggtctggcg
gtgagtattctctatgagaatggcgtgctgatccgcgcggcaacgcgtggcgacgggaca
accggtgaagacattaccagcaacgtgcgcactatccgcgctatcccactgaaactgcac
ggcgacaatattcccgcccgccttgaagtgcgcggggaagtctttttgccgcagtcgggt
tttgaaaagatcaacgaagaggcgcgtcgtaccggcgcaaaagtgttcgccaacccgcgc
aacgcagcagcggggtcgttacgccagcttgatccgcgtattacggcgaaacgcccgctc
actttcttctgttacggtgtcggcatcctcgaaggtggcgagctaccgcgtagccatatg
gggcgtttgcagcagttcaaagcctggggtttaccggtgagtgagcgcatacgtctttgt
gattcgccggaagcggtgctggcgttctaccgtcaggtggaaaacgatcgtccgacgctg
ggcttcgacattgacggcgtggtgattaaagttgattcgctggagttgcaggagcaactg
ggttttgtcgcgcgcgcgccgcgctgggcggtggcgttcaaattcccggcgcaggagcag
atgactttcgttcgcgacgtcgaatttcaggttggccgcaccggggctatcacgccggtt
gcaaggctggagccggtacacgttgcaggcgtattggtgagtaatgccacgctgcataat
gctgatgaaatcgatcggctggggttgcgtattggcgataaagtggtgattcgacgcgcc
ggtgatgtgatcccgcaggtggtcaacgtggtgctcgccgagcgaccggaagagacgcgc
gaagtgattttcccgcaacattgcccggtatgtggttccgatgtggagcgtgttgaaggc
gaagccgtcgcccgctgtaccggcggcttaatttgcggcgcccagcgcaaagaagcgctt
aaacattttgtctcccgccgcgcgatggacgtggacggcatgggcgataaaatcatcgac
caactggtagagaaagagtatgtccagacgcctgctgatctgttccgtctgacggcgggc
aagctgaccggcctggatcgcatggggccaaaatcggcgcaaaacatcattactgcgctg
gaaaacgccaaagagacgacgtttgcccgcttcctttatgcgctggggatccgcgaagtc
ggtgaggccacggcggctgggctggcggcgtattttggtacgctggatgcgctgatggcg
gcatcggtggatgagctacaaaaagtacccgatgtcggcgttgtggtcgcgaagcacgtg
aacaacttcttcaatgaagagagtaaccgcgaagtcatcgcgcaattggttggcgaagtg
ggtattcactggcctgcgccgttagtggtcaatgctgaagagatcgacagcccgtttgcc
ggtaaaacggtggtgctgaccggtagccttagccagctctctcgcgatgaggccaaagct
cgtctgacggcactgggtgccaaagtggccggtagcgtgtcgaaaaaaaccgatctggtg
atcgccggggaagcggcaggttcaaaactggcaaaagcgcaggaactggggatcgctgtg
attgatgaagcggagatgatccggctgctgggggaataa
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