Komagataeibacter rhaeticus: GWK63_10000
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Entry
GWK63_10000 CDS
T06497
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kre
Komagataeibacter rhaeticus
Pathway
kre03030
DNA replication
kre03410
Base excision repair
kre03420
Nucleotide excision repair
kre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GWK63_10000 (ligA)
03410 Base excision repair
GWK63_10000 (ligA)
03420 Nucleotide excision repair
GWK63_10000 (ligA)
03430 Mismatch repair
GWK63_10000 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kre03032
]
GWK63_10000 (ligA)
03400 DNA repair and recombination proteins [BR:
kre03400
]
GWK63_10000 (ligA)
Enzymes [BR:
kre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GWK63_10000 (ligA)
DNA replication proteins [BR:
kre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GWK63_10000 (ligA)
DNA repair and recombination proteins [BR:
kre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GWK63_10000 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GWK63_10000 (ligA)
MMR (mismatch excision repair)
DNA ligase
GWK63_10000 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GWK63_10000 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QIP35757
UniProt:
A0A181CBX8
LinkDB
All DBs
Position
2198599..2200737
Genome browser
AA seq
712 aa
AA seq
DB search
MPPTPEAPRPAEQARRLLADYATMEQDAPNAEKALTQLATLLPALDAAYHQHDAPLVDDA
TYDSLRQLNTRLEARFPDLRRTDSPAQQVGAPATGPFRRHRHMVPMLSLDNVFSREEFEG
FISRIARFLGLDEEQARQLSFVAEPKIDGLSISLTYEHGRFVRGTTRGDGTEGEDVTANL
RTLRDIPDQLPAPCPDVIEIRGEVFLSKQAFLELNAAQERAGDRPFANPRNAAAGSLRQL
DAGITARRPLSLFAYAAGYCSAPLAATHHGYLAQLAAWGFRVNPLSTQVKDAGAAEAFME
RLTLERSALDYDIDGIVYKLDDRALQERLGFAGRAPRWAVAWKFPAEQAVTRLEKIDIQV
GRTGALTPVAFLEPVNVGGVMVTRASLHNEDEITRKDIREGDLVHVQRAGDVIPQVTGVV
LPRDHDRPPYRFPHVCPACGAHAERPEGEVVWRCSGGLTCPAQVVERLIHFVSRDAFDIE
GLGDRTIVEFHELGWLRTPADIFRLDAHEAEIASRDGWGRVSAHNLVTAIAARRTIELSR
LIYALGIRRIGINNARLLARHYGSLANWRAQMEKAAVIGSDARLELGSITGIGTAIADEL
VAFFAEAHNRATLDDLTHVLDHVTDEQAVAEGTLSGRTIVFTGTLTTMTRPEARAVAERL
GARVSDSVSTKTDLVVLGEKAGSKARKAAELGIRTMDEAGWRVLAGMPPAPA
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgccccccacgcccgaagccccccggcccgccgaacaggcgcgccgcctgctggccgat
tacgccacgatggagcaggacgcccccaatgcggaaaaggccctgacgcagctggccacg
ttgctgccagcccttgatgccgcctaccaccagcatgacgcgccgctggttgatgatgcg
acgtatgacagcctgcgccagctcaatacccggctggaagcacgcttccccgacctgcgc
cgcaccgacagcccggcgcaacaggtgggggcccctgcaaccggccccttccgccgccac
cgccacatggtgcccatgctgtcgctggacaacgtgttctcacgcgaggaattcgagggg
ttcatcagccggatcgcccgcttccttggcctggacgaggaacaggcccgccagctttcc
tttgtggcggaacccaagattgatggcctgtcgatcagcctgacctatgaacacggccgc
ttcgtgcgcggcaccacacggggcgacggcacggaaggcgaggacgtgaccgccaacctg
cgcacgctccgtgacattcccgaccagctacccgccccctgccccgatgtgatcgagatc
cggggggaagtgttcctgtccaagcaggccttccttgaactcaacgcggcacaggaacgc
gcgggggacaggccctttgccaacccgcgcaatgcggcggcaggttccctgcgccagctt
gatgcggggattaccgccagacgcccgctttcgctgttcgcctatgcggcggggtattgc
agcgcgccgctggcggccacgcatcatggctacctggcgcagcttgccgcatggggcttc
cgggtcaatccgctcagcacgcaggtgaaggatgccggggcggcggaagccttcatggaa
cggctgacgctggaacgctcggcgctggattatgatattgacggcattgtctacaagctg
gacgaccgcgcattgcaagaacgcctcggctttgcggggcgtgcgccacgctgggcggtg
gcctggaaattccccgccgaacaggcggtgacccggctggaaaagatcgacatacaggtg
ggccgcaccggcgccctgacgcccgtggcctttctggagccggtgaatgtgggcggggtg
atggtgacccgcgccagcctgcataacgaggacgagattacccgcaaggacatccgtgag
ggcgaccttgtgcatgtgcagcgcgcgggtgacgtgatcccgcaggtcacgggcgttgtc
ctgccacgcgaccatgaccgcccgccctaccgcttcccccacgtctgccccgcatgcggc
gcgcatgccgaacggcccgaaggcgaggtggtgtggcgctgttcgggggggcttacctgc
ccggcacaggtggtggaacggctgatccacttcgtctcacgcgatgcgttcgacatcgag
ggactgggcgaccgcaccattgtggaattccacgaactgggctggctgcgcaccccggcc
gacatcttccgcctggacgcgcatgaggccgagatcgccagccgtgacgggtggggcagg
gtctcggcccacaaccttgtcaccgccattgcggcacgccgcacgatcgaactgtcgcgg
ctgatctatgcgctgggcatccggcgcatcggcatcaacaacgcccgcctgctggcacgg
cattacggttcgctcgccaactggcgcgcgcagatggaaaaggccgccgtcatcgggtcg
gacgcacggctggaactggggtcgatcaccggcattggcaccgccatcgccgatgaactg
gtggccttctttgccgaggcccacaaccgcgccacgctggatgacctgacccatgtgctg
gaccatgtaaccgatgagcaggccgtggccgagggcacgctgtcgggcaggaccatcgtg
tttaccggaacactcaccaccatgacccggcccgaggcccgggcggtggccgaacggctg
ggggcaagggtttcggacagcgtctccacgaaaaccgacctggtggtactgggcgaaaag
gcggggtccaaggcgcgcaaggcggccgaactggggatcaggacgatggatgaggcaggc
tggcgtgtccttgcgggcatgccgcccgctccggcataa
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