Kribbella sp. CA-293567: OX958_12180
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Entry
OX958_12180 CDS
T10137
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kri Kribbella sp. CA-293567
Pathway
kri03030
DNA replication
kri03410
Base excision repair
kri03420
Nucleotide excision repair
kri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OX958_12180 (ligA)
03410 Base excision repair
OX958_12180 (ligA)
03420 Nucleotide excision repair
OX958_12180 (ligA)
03430 Mismatch repair
OX958_12180 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kri03032
]
OX958_12180 (ligA)
03400 DNA repair and recombination proteins [BR:
kri03400
]
OX958_12180 (ligA)
Enzymes [BR:
kri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OX958_12180 (ligA)
DNA replication proteins [BR:
kri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OX958_12180 (ligA)
DNA repair and recombination proteins [BR:
kri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OX958_12180 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OX958_12180 (ligA)
MMR (mismatch excision repair)
DNA ligase
OX958_12180 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OX958_12180 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
HHH_8
SLATT_1
HHH_3
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
WBQ08612
LinkDB
All DBs
Position
2524988..2527000
Genome browser
AA seq
670 aa
AA seq
DB search
MATSTISDADFDALMHELQAIEEQYAELRTPDSPTQKVGVPISTLFTAVEHPQRMESLAN
AFSAEQMEAWAKRLEREVTVQQIHHSGFLCELKVDGLALDLVYENGRLVSGATRGDGRTG
EDITLNARTIDSIPNELATDDPPAFLEVRGEVYFRVEDFTELNAQLVEAGKDPFSNPRNS
AAGSLRQKDPRVSASRPLRFVVHGIGKVEGLRIDRLSEAYQLLREWGLPVSDRARRVETL
AEVNEFIAYYGENRHSVDHEIDGVVVKVDEVDLQRALGSTSSAPRWAIAYKYPPEEVTTK
LLSIDVNVGRTGRVTPYGVMEPVRVAGSTVEFATLHNAQEVERKGVWIGDTVVLRKAGDV
IPEILGPVMELRPADAYPFRMPTHCPSCRTELRAMKEGDVDIRCPNSRSCPAQLRERLFH
LAGRSAFDIEVLGFKAADALIGNELITDEGDLFSLTEQDLIGSSFFTTKAGALSANATKL
LANLERAKKQQLSRGLVALSIRHVGPTAAAALAAAYDDIAAIEAASEEELAQLEGVGPTI
AHAVIEWFAVDWHQEIVRKWTEAGVELRQIRSGPTVEQTLVGQSVVVTGTVEGFSRDEAT
EAIVSRGGKVAGSVSKKTSFVVVGDSPGSKYDKAVQLGVPILDAAGFGVLLTEGPEAAAA
VATRPAPEDA
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggccacctcgaccatctccgacgccgacttcgacgcgctgatgcacgagctgcaggcg
atcgaggagcagtacgccgagctccgcacgcccgactcgcccacccagaaggtgggagtg
ccgatctcgaccctgttcaccgcggtcgagcacccgcaacggatggagagcctcgccaac
gccttctccgccgaacagatggaggcctgggccaagcggctggagcgcgaggtcaccgtc
cagcagatccaccacagcggcttcctgtgcgagctgaaggtggacggactggccctcgac
ctggtctacgagaacggccggctggtcagcggcgccacccgcggcgacggccgcaccggt
gaggacatcacgctgaacgcccgcaccatcgactccatccccaacgagctggcgaccgac
gacccaccggccttcctggaggtccgcggcgaggtctacttccgggtcgaggacttcacc
gagctgaacgcccagctcgtcgaggccggcaaggacccgttctccaacccgcgcaacagt
gccgccggatccctgcgccagaaggatccccgggtctccgcgagccgtccgctgcggttc
gtcgtgcacggcatcggcaaggtcgaaggacttcgcatcgaccggctctccgaggcctac
cagctgctcagggagtggggtctgccggtcagcgaccgggcccgccgggtcgagacgctg
gcggaggtgaacgagttcatcgcctactacggcgagaaccggcactccgtggaccacgag
atcgacggcgtcgtggtcaaggtggacgaggtcgacctgcaacgcgcgctcggctcgacg
tcgagcgccccgcggtgggcgatcgcgtacaagtacccaccggaagaggtgaccaccaag
ctgctgtcgatcgacgtgaacgtcggccgcaccggccgggtcacgccgtacggggtgatg
gagccggtccgggtggccggctcgacggtcgagttcgcgaccctgcacaacgcccaggag
gtcgagcgcaagggcgtctggatcggcgacaccgtcgtcctgcggaaggccggtgacgtg
atcccggagatcctcggcccggtgatggagctgcgccccgccgacgcgtacccgttccgg
atgccgacccactgcccttcctgccggaccgagctgcgggcgatgaaggagggcgacgtc
gacattcgttgccccaactcccgatcgtgcccggcgcagttgcgggagcggttgttccac
ctggccggccgatccgccttcgacatcgaggtgctcggcttcaaggccgccgacgcgctg
atcggcaacgagctgatcacggacgagggtgacctgttctcgctcaccgagcaggacctg
atcggcagttccttcttcaccaccaaggccggcgcgctgtcggccaacgccaccaagctg
ctggccaacctcgagcgggcgaagaaacaacagctgtcacgagggctggtcgcactgtcg
atccggcacgtcggcccgaccgcggcggccgcgctggcggcggcgtacgacgacatcgcc
gcgatcgaggctgcctcggaggaggaactggcgcagctcgagggcgtcgggccgaccatc
gcgcacgcggtgatcgagtggttcgccgtcgactggcaccaggagatcgtccggaagtgg
accgaagccggcgtcgaactgcgccagatccggtctggaccaacggtcgaacagaccctg
gtgggacagtctgtggtggtcaccgggacggtcgaggggttcagcagggacgaggcgacc
gaagcgatcgtctcgcggggcggcaaagtggccggctcggtgtccaagaagacgtcgttc
gtggtggtcggcgattcgccgggatccaagtacgacaaggcggttcagctcggggtgccg
atcctggacgccgccggcttcggtgttctgctcaccgaggggccggaggcggccgcggcg
gtggccaccaggcctgctccggaagatgcctga
DBGET
integrated database retrieval system
