Kocuria rosea: EQG70_12170
Help
Entry
EQG70_12170 CDS
T06074
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
krs
Kocuria rosea
Pathway
krs03030
DNA replication
krs03410
Base excision repair
krs03420
Nucleotide excision repair
krs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
krs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EQG70_12170 (ligA)
03410 Base excision repair
EQG70_12170 (ligA)
03420 Nucleotide excision repair
EQG70_12170 (ligA)
03430 Mismatch repair
EQG70_12170 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
krs03032
]
EQG70_12170 (ligA)
03400 DNA repair and recombination proteins [BR:
krs03400
]
EQG70_12170 (ligA)
Enzymes [BR:
krs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EQG70_12170 (ligA)
DNA replication proteins [BR:
krs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EQG70_12170 (ligA)
DNA repair and recombination proteins [BR:
krs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EQG70_12170 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EQG70_12170 (ligA)
MMR (mismatch excision repair)
DNA ligase
EQG70_12170 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EQG70_12170 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QCY33527
LinkDB
All DBs
Position
complement(2636883..2639177)
Genome browser
AA seq
764 aa
AA seq
DB search
MSPQQRTDARPVDATGQDLNPAPPSEDLKEQYAELVDRVRAARTAYYVEDAPTISDAEYD
ELYRRLEEVEALHPELVANDSPTQEVGGEVSAAFTPVTHLARMYSLEDVFSIDELTAWLA
KASASIEALPDAPESAWLTELKIDGLAVNLLYRNGELVRAATRGDGTTGEDVTHNVRTIA
TIPTVLTGEDVPEEVEIRGEVFISSRDFRALNDAIVAEGRAPFANPRNAAAGSLRQKDPA
VTARRRLSMYVHGVGAATGLHADTQSQVYELLERWGLPVSPYYRVLPSTEDVLAFIEEYG
RRRHDLIHEIDGIVVKVDDRRTQFRLGHTSRVPRWSVAYKYPPEEVHTRLKDILVNVGRT
GRVTPFGLMEPVRVAGSTVEMATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEIVGPVVAL
RDGTEREFVMPTHCPSCGTELRPAKEGDVDIRCPNARSCPSQLRERVFHAAGRGAFDIEA
LGYEAALALTRPDEPETPPLTSEAHLFDLTPEDLREVRIRREKKSRGTPTGETELVPYFW
TKGTAKKPSEPTATTRKLFEELEKAKAQPLWRVLVALSVRHVGPTAARSLATAFGSLPAI
RDADEETLAQADGVGPVIAAALTEWFAEPWRRQIVERWAAAGVRMEDEVDESVPRTLEGT
TVVITGTLERFSRDSAKEAVLVRGGKASGSVSKKTHFLVAGENAGTKLDKAEQLGVTVLD
EAGFERLLAEGPDALAGAAGSTSEDAPAGTENGTENGTDDEDGA
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
gtgagcccacagcagaggacagacgcacgacccgtcgacgccaccggccaggacctcaac
cccgccccgcccagcgaggacctcaaggagcagtacgcggagctcgtggaccgggtgcgc
gcggcacggaccgcctactacgtcgaggacgcgcccaccatctcggacgcggagtacgac
gagctctaccggcggctcgaggaggtcgaggcgctgcaccccgagctggtggccaacgac
tcgcccacccaggaggtcggcggcgaggtctccgcggcgttcacgcccgtgacgcacctc
gcgcggatgtactccctcgaggacgtcttctcgatcgacgagctcacggcctggctggcg
aaggcctccgcctccatcgaggcgctgccggacgccccggagtccgcgtggctcaccgag
ctgaagatcgacgggctggccgtgaacctgctctaccggaacggcgagctcgtgcgggcc
gcgacccggggggacggcaccacgggcgaggacgtcacgcacaacgtgcgcaccatcgcc
accatccccaccgtgctcacgggggaggacgtgcccgaggaggtcgagatccgcggcgag
gtgttcatctcctcccgcgacttccgcgccctcaacgacgccatcgtggccgagggccgg
gcgcccttcgccaacccccgcaacgccgcggcgggctcgctgcggcagaaggacccggcg
gtcacggcccggcgccggctgtccatgtacgtgcacggggtgggcgccgccacgggcctg
cacgccgacacccagtcccaggtctacgagctgctcgagcggtggggcctgcccgtcagc
ccgtactaccgcgtgctgccctccacggaggacgtcctcgcgttcatcgaggagtacggc
cgccgccgccacgacctcatccacgagatcgacggcatcgtggtcaaggtcgacgaccgc
cgcacccagttccggctcgggcacacctcccgggtgccccgctggtccgtggcctacaag
tacccgcccgaggaggtgcacacccggctcaaggacatcctggtcaacgtgggccgcacc
gggcgggtcaccccgttcgggctcatggagccggtgcgggtcgccgggtccaccgtggag
atggccaccctgcacaaccaggacgtggtgaaggccaagggcgtgctcatcggggacacc
gtggtgctgcgcaaggcgggcgacgtgatccccgagatcgtggggcccgtggtggcgctg
cgggacggcacggagcgcgagttcgtgatgcccacccactgcccgtcctgcggcacggag
ctgcgcccggccaaggagggcgacgtcgacatccgctgccccaacgcccgcagctgcccg
tcccagctgcgggagcgggtcttccacgccgccggccgcggcgcgttcgacatcgaggcc
ctcggctacgaggccgccctcgccctgacccggcccgacgagccggagaccccgccgctg
accagcgaggcgcacctgttcgacctcacccccgaggacctgcgcgaggtgcggatccgg
cgggagaagaagtcgcgcggcacgcccacgggcgagaccgagctcgtgccctacttctgg
acgaagggcacggccaagaagccctccgagcccaccgccaccacccgcaagctgttcgag
gagctcgagaaggccaaggcgcagccgctgtggcgcgtgctcgtggccctgtccgtccgg
cacgtcggcccgaccgcggcccgctccctggccacggccttcggctcgttgccggccatc
cgcgacgccgacgaggagaccctggcccaggccgacggagtggggcccgtgatcgccgcg
gccctcaccgagtggttcgccgagccgtggcgccggcagatcgtggagcgctgggcggcc
gcgggcgtgcgcatggaggacgaggtggacgagtccgtgccgcggaccctcgagggcacc
accgtggtgatcaccggcaccctcgagcgcttcagccgcgactccgcgaaggaggcggtg
ctggtgcgcggcggcaaggcctccggctccgtgtcgaagaagacgcacttcctggtggcg
ggcgagaacgccggcaccaagctggacaaggccgagcagctgggggtgaccgtgctcgac
gaggccgggttcgagcggctcctcgccgaggggccggacgcgctcgccggcgcggccggg
agcacctccgaggacgccccggccggcacggagaacggcacggagaacggtacggacgac
gaggacggggcctga
DBGET
integrated database retrieval system
