Komagataeibacter saccharivorans: CD178_02123
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Entry
CD178_02123 CDS
T05634
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ksc
Komagataeibacter saccharivorans
Pathway
ksc03030
DNA replication
ksc03410
Base excision repair
ksc03420
Nucleotide excision repair
ksc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ksc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CD178_02123 (ligA)
03410 Base excision repair
CD178_02123 (ligA)
03420 Nucleotide excision repair
CD178_02123 (ligA)
03430 Mismatch repair
CD178_02123 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ksc03032
]
CD178_02123 (ligA)
03400 DNA repair and recombination proteins [BR:
ksc03400
]
CD178_02123 (ligA)
Enzymes [BR:
ksc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CD178_02123 (ligA)
DNA replication proteins [BR:
ksc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CD178_02123 (ligA)
DNA repair and recombination proteins [BR:
ksc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CD178_02123 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CD178_02123 (ligA)
MMR (mismatch excision repair)
DNA ligase
CD178_02123 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CD178_02123 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AXY22876
UniProt:
A0A347WDD3
LinkDB
All DBs
Position
complement(2230880..2233024)
Genome browser
AA seq
714 aa
AA seq
DB search
MPPLAPLQSLTEQARSLLADAAAAEQDAHHAARLLERLAQVLPALDAAYHQNDAPAVDDA
TYDALRRLNTELESRFPGLHRADSPTARVGAPATGPFHRHRHMVPMLSLDNVFSREEFDS
FVSRIARFLGLTDEHAHQLAFVAEPKIDGLSISLTYEHGRFMRGTTRGDGTEGEDVTANL
RTMGDVPEQLPGPFPDIIEIRGEVFLSKQAFLDLNAAQERAGDKPFANPRNAAAGSLRQL
DPNITARRPLSLFAYAAGFCSAPLPATHHAYLRQLEDWGFRINPLNTQVRNAADAESFME
RLTRERSALDYDIDGIVYKIDDRALQDRLGFAGRAPRWAVAWKFPAEQAITRLEAIDIQV
GRTGALTPVALLQPVNVGGVIVTRASLHNEDEITRKDIRIGDLVHIQRAGDVIPQVTGVV
LPRDGEREPYAFPHICPVCGAHAERPEGEVVWRCSGGLTCPAQVVERLSHFVSRDAFDID
GLGDRTITEFHELGWLRTPADIFRLEAHETEIASRDGWGKVSARNLVTAIAARRTIELSR
LIYALGIRRIGINNARLLARHYHSLANWREQMEKAAIIGSDERLELGSITGIGTAIADEL
VAFFAEEHNRTTLDDLTAQLAQVVDEEMVAEGALSGKTIVFTGTLTTMTRPEARAVAERL
GARVSDSVSKKTDLVVLGEKAGSKARKAAELGVATMDEADWRTLAGMPPVTAQE
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgccccccctcgcccccctgcaatcgcttacggaacaggccagaagcctgctggctgat
gccgccgccgccgaacaggacgcacaccatgcagcacgcctgctggaacgtctggcacag
gttctgcctgcactggacgccgcctatcaccagaatgatgcgcccgctgtcgatgatgcc
acctacgatgcgctgcgcaggctgaataccgaactggaatcccgcttccccggcctgcac
cgcgccgacagcccgaccgcacgggtcggcgcacctgctaccggccccttccaccgccac
cggcacatggtgccgatgctctcgctcgataacgttttctcacgcgaggaatttgacagc
ttcgtcagccgtatcgcccgcttccttggcctgacggatgaacatgcccaccagcttgcc
tttgtggcggaacccaagattgacggcctgtccatcagcctgacctacgaacacgggcgt
ttcatgcgcgggaccacgcggggtgacgggacggaaggcgaggacgtaacggccaacctg
cgcacgatgggcgatgtgcctgaacagctacctggccccttccccgatatcatcgaaatc
cggggcgaggttttcctgtccaaacaggcatttctggacctgaacgcggcacaggaacgc
gcgggcgacaaacctttcgccaacccgcgcaatgccgccgcagggtcgttacgccagctt
gatcccaatattacggccagacgcccgctatccctgtttgcctatgccgccggtttttgc
agcgcgccgctacccgcgacccatcatgcctacctccggcagcttgaggactggggtttc
cggatcaatccgctcaacacgcaggtccgcaatgcggcggatgccgaatccttcatggaa
cggctgacacgcgaacgttcggcgctggactatgacattgacggcattgtctacaagatc
gacgaccgggcgctacaggaccgcctcggcttcgcgggacgtgcgccgcgctgggcggta
gcgtggaaattccccgctgaacaggcgataacacggctggaagccatcgacatacaggtc
ggacgcaccggcgcgctgacaccggtggcactcctgcaacccgtcaatgtgggcggcgtg
atcgtgacccgcgccagcctgcataatgaagatgaaatcacgcgcaaggacatccgtatc
ggcgatctggtgcatatccagcgcgcaggcgacgtgatcccgcaggtgacgggtgttgtc
ctgccgcgcgatggcgagcgggagccctacgcttttccccatatctgtcccgtctgcggc
gcccatgccgaacgtcccgaaggcgaggtcgtatggcgctgttccggcgggctgacctgt
ccggcgcaggtggtggaacgtctgagccatttcgtatcgcgcgatgcgttcgatatcgac
ggtcttggcgaccgcacgattacggaattccatgaactcggctggctgcgcaccccggcc
gatattttccgccttgaagcccatgaaaccgaaatcgccagtcgtgacggctggggcaag
gtttcggcccgcaaccttgtcaccgccatcgcggcaaggcgcaccattgaactgtcacgg
ctgatctatgcgctgggtatccggcgcatcggcatcaacaatgcccggttgctggcgcgg
cattaccattcgctggcgaactggcgcgagcagatggaaaaagcagccataatcggatcg
gatgaacggctggaactgggttccatcaccggaatcggcacggccatcgccgatgaactg
gtcgccttctttgccgaggaacacaaccgtactacgctggatgacctgaccgcacagctt
gcgcaggttgtggacgaggaaatggtggccgaaggcgcactgtcgggcaagaccatcgtc
tttaccggcacgctgacgaccatgacccgccccgaagcccgcgccgtggccgagcgtctg
ggcgccagggtctcggacagcgtatcgaaaaagacggatcttgtggtgctgggtgaaaaa
gcgggctccaaggcccgcaaggccgccgaactgggcgtcgccaccatggatgaagccgac
tggcgcacactggctggcatgccgcccgtgacggcgcaggaatga
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