Kangiella sediminilitoris: KS2013_1068
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Entry
KS2013_1068 CDS
T04467
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ksd
Kangiella sediminilitoris
Pathway
ksd03030
DNA replication
ksd03410
Base excision repair
ksd03420
Nucleotide excision repair
ksd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ksd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KS2013_1068
03410 Base excision repair
KS2013_1068
03420 Nucleotide excision repair
KS2013_1068
03430 Mismatch repair
KS2013_1068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ksd03032
]
KS2013_1068
03400 DNA repair and recombination proteins [BR:
ksd03400
]
KS2013_1068
Enzymes [BR:
ksd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KS2013_1068
DNA replication proteins [BR:
ksd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KS2013_1068
DNA repair and recombination proteins [BR:
ksd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KS2013_1068
NER (nucleotide excision repair)
GGR (global genome repair) factors
KS2013_1068
MMR (mismatch excision repair)
DNA ligase
KS2013_1068
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KS2013_1068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
5_3_exonuc
RNA_pol_A_CTD
HHH_3
DUF4841
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AOE49788
UniProt:
A0A1B3BAG8
LinkDB
All DBs
Position
1163616..1165634
Genome browser
AA seq
672 aa
AA seq
DB search
MTNRTDSVKQELERLRSLISDYNYQYYVLDDPSVPDAEYDRLYRQLSKLESEHPDLVTDN
SPTQRVGAKPDSGFDEVVHELPMLSLDNAMDDEEMASFNRRVQDRLAIKDDIEYVCEPKL
DGLAISLLYENGLLTRAATRGDGMQGENITLNARTIRSIPLELRTEVPPKRFEVRGEVFM
LKSSFEALNDEARNNGAKTFANPRNAAAGSLRQLDPKITAKRNLSFYAYSMGIVSEEFEL
ADSHYERLQQVKELGLPVSPEVKKANGIDGCLKYYQDIMDRRDSLEYEIDGVVNKVNSIK
FQERLGFVARAPRWAIAHKFPAQEEITQLIGVDFQVGRTGAITPVARLEPVSVGGVTVSN
ATLHNMDEIQRLGVKVKDFVIIRRAGDVIPQVVSVIKDRRPDDSSEIAAPRTCPVCSSPV
ERAEGEAVLRCTGGLICSSQRNESIKHFASRKAMDIDGLGDKLVEVLTEKNFISSVSDLF
RLTEKQLTGLERMGEKSANNLLKALEKSKETTLPKFLFSLGIREVGEVTAKNIANHFLTL
DKIIDATVDELIEVPDVGPIVAQHIHAFFDNKENLEQVKELVELGVSWPEIEKKSDEELP
LKGNTYVITGSFEGISRTEIKERLESLGAKVSGSVSKKTTALIAGEKAGSKLTKAESLGI
DVLGADFLDNYI
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacagaaccgacagcgtaaaacaagagttggagcggttacgctcccttattagt
gattacaattatcaatattatgtactggatgatccttcagtacctgatgctgagtatgat
cgtttatacagacagctgtcaaagcttgagtctgagcaccctgacttagtcactgataac
tcaccaacccagagggttggagccaagccggattctggattcgatgaagttgtccatgag
ttgcctatgttatctttagataatgccatggacgatgaagaaatggctagttttaatcgt
agagttcaggacaggctggcgataaaagatgacattgaatatgtatgcgagcctaaatta
gatggcttagctataagcctcctttatgagaatggtttactgactcgtgcagctactcgg
ggagatggtatgcagggagagaacattactctgaatgcccgtacgatacgctcaatccca
cttgagttacgaaccgaagtacctcctaaacgttttgaggtccgtggcgaagtgtttatg
ctgaaaagttcttttgaagcgctgaatgatgaagcccgtaacaatggagctaagaccttt
gccaaccctagaaatgcagccgcgggcagcttacgccagctagaccccaaaataactgcc
aaaaggaacttgtcattttatgcctattctatgggtatagtttcagaggaatttgagtta
gctgacagtcattacgaacgtttgcagcaggtgaaagagcttggcttacctgtttctccg
gaagtaaaaaaagctaatggtatagatggttgcctcaagtactatcaggatattatggac
cgaagggattccctcgagtatgaaattgatggtgttgttaataaagttaacagtatcaag
tttcaggagcgcctcggttttgttgctcgtgcaccacgatgggcaattgcacataaattt
ccagcgcaggaggaaatcacacagttaatcggagttgattttcaggtcggtagaactgga
gcaatcactcccgttgcacgcttagagcctgtatccgtcgggggtgtgactgtcagcaat
gcaactttgcacaacatggatgagatccagaggctcggggtaaaggttaaagattttgtt
ataatccgtcgtgccggtgatgtaataccgcaggttgttagtgttataaaagatagacgc
cctgatgatagttctgagattgccgccccccgaacctgtcctgtttgctcgtctcctgtc
gaaagggctgaaggagaagccgtgttgcgttgtactggaggtttaatttgctcttctcag
cgtaatgagtctataaagcattttgcttcccgtaaggctatggatattgatggccttggg
gataagcttgtggaggttctaacagaaaagaactttatcagttctgtcagtgaccttttt
aggctaacagagaaacaattaacgggtttagagcggatgggtgaaaagtccgccaataat
ttgttgaaagccttagagaaaagcaaagaaacaacattacctaaatttctattttccctt
ggtatcagggaagtcggtgaagtaacagctaagaatatcgccaatcacttccttacttta
gataaaattattgatgctactgtagatgagcttatagaggtccccgatgtagggccgatt
gtggcccagcacatacatgctttctttgataataaagaaaatttagagcaggtgaaggag
ctagttgaactgggggttagctggccagagattgagaaaaagtcagacgaggagttgcct
ttgaaaggtaatacttatgtcatcaccggctcttttgaaggtattagcagaacagagatc
aaagagcggcttgaatcacttggtgcaaaagtctccggatcagtttctaaaaagaccacc
gcattgattgcaggtgaaaaggctggcagcaaattgactaaagcagagtctctagggata
gatgttttaggcgctgacttcttggataattatatttaa
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