Kytococcus sedentarius: Ksed_09780
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Entry
Ksed_09780 CDS
T00974
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kse
Kytococcus sedentarius
Pathway
kse03030
DNA replication
kse03410
Base excision repair
kse03420
Nucleotide excision repair
kse03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ksed_09780
03410 Base excision repair
Ksed_09780
03420 Nucleotide excision repair
Ksed_09780
03430 Mismatch repair
Ksed_09780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kse03032
]
Ksed_09780
03400 DNA repair and recombination proteins [BR:
kse03400
]
Ksed_09780
Enzymes [BR:
kse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ksed_09780
DNA replication proteins [BR:
kse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ksed_09780
DNA repair and recombination proteins [BR:
kse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ksed_09780
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ksed_09780
MMR (mismatch excision repair)
DNA ligase
Ksed_09780
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ksed_09780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ACV06024
UniProt:
C7NG24
LinkDB
All DBs
Position
1009346..1011658
Genome browser
AA seq
770 aa
AA seq
DB search
MSPQSTEPSPSPENTPDVPAAPDSPDAAQNTPDVPDEGVRHQWDDLARRVREHRFAYYLG
RPTISDADFDALFRELEQLESEHPGLRTPESPTQEVGAPVFETGFDAVDHAERMLSLDNV
FSSEELAAWFQRARDAAGTTDLHYLCELKIDGLAVNLTYEDGVLVRAATRGDGRTGEDIT
LNVRTIQGVPHRLERPADLADDATATVDVPPLVEVRGEVFLPLEKFAELNARQVEAGKAA
FANPRNAAAGSLRQKDPRVTASRPLRMIVHGIGAREGFDIARQSEAYEVLAGWGLPVTSH
AKVLDTLEEIEQYVAYWGGHREGAEHELDGIVIKIDEVTVQRQLGSTSRAPRWAIAWKYP
PQEVTTKLLDIAVNVGRTGRVTPFGVMEPVTVAGSTVSMATLHNAHEVQRKGVLIGDTVV
LRKAGDVIPEILGPVADLRDGSETAFVMPTHCPSCGTELAPAKEGDKDIRCPNSRSCPSQ
LRERLFGLAGRGAFDIESLGWEGAGALLDAGVLTDEAGVFDLTAEDLLRTSLYTRAAKKA
EAAAAEEGDPEGVLPPGGVVDGRVLSAVGVRLLDNLQQVKEQPLWRVLVALSIRHVGPTA
ARALAGHFATMEAIRAASTEELAAVEGVGPTIAEAVTEWFGGEGNGWHRQIVDTWAAAGV
RMADERDESIERTLEGLTVVVTGSLEGWSRDESKEAILTRGGKASGSVSKKTDYVVVGAN
AGSKATKAEELGLPILSEEQFGELLATGRVEGVTPEDDAGTDAEEPAEKA
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
gtgagtccgcagagcaccgagcccagcccctcgccggagaacacccccgacgtgcccgcc
gcccccgacagcccggacgcggcacagaacacccctgacgtgcccgatgagggcgtccgt
caccagtgggacgacctcgcccgccgggtgcgggagcaccgcttcgcctactacctgggc
cgcccgacgatcagcgacgccgacttcgacgccctgttccgcgagctcgagcagctcgag
tccgagcaccccggcctgcgcaccccggagagccccacccaggaggtcggggcgccggtc
ttcgagacgggcttcgatgcggtggaccacgccgagcgaatgctcagcctcgacaacgtc
ttctcctccgaggagctggccgcctggttccagcgcgcccgggacgccgccggcaccacg
gatctgcactacctgtgtgagctgaagatcgacggcctggccgtcaacctcacctacgag
gacggcgtgctggtgcgggccgcgacacgcggtgacggccgcaccggcgaggacatcacg
ctgaacgtgcgcaccatccagggcgtcccccatcggctggagcgtcccgcggacctggcg
gacgacgccaccgccacggtcgacgtcccgccgctggtggaggtgcgcggggaggtcttc
ctgcccctggagaagttcgccgagctgaacgcccgccaggtggaggccggcaaggcggcc
ttcgccaacccgcgcaacgcggccgcggggtcgttgcggcagaaggacccacgggtcacc
gcatcgcgtccgctgcggatgatcgtccacggcatcggggcccgcgagggcttcgacatc
gcccgccagagcgaggcctacgaggtgctcgccgggtgggggttgccggtcacctcccac
gccaaggtgctggacaccctcgaggagatcgagcagtacgtggcgtactggggcggccac
cgggagggtgccgagcacgagctggacggcatcgtcatcaagatcgatgaggtgacggtc
cagcgccagctcggctccacctcgcgcgcaccgcggtgggcgatcgcctggaagtacccg
ccccaggaggtcaccacgaagctgctggacatcgcggtcaacgtggggcgcaccggtcgt
gtcacgcccttcggcgtcatggagccggtgacggtcgcggggtccaccgtctcgatggcc
accctccacaacgctcacgaggtgcagcgcaagggcgtactgatcggcgacacggtcgtg
ctccgcaaggccggcgacgtcatccccgagatcctcgggccggtggccgacctgcgcgac
ggcagcgagaccgcgttcgtcatgcccacccactgcccctcctgcgggaccgagctcgcc
ccggcgaaggagggcgacaaggacatccgctgccccaacagccggtcgtgcccctcgcag
ctgcgcgagcggctcttcgggctggccgggcgcggggccttcgacatcgagtccctcggg
tgggagggcgccggcgcgctgctcgatgcgggcgtgctcaccgacgaggcgggcgtcttc
gacctcaccgccgaggacctgttgcggaccagcctgtacacgcgggcggccaagaaggca
gaggccgcggccgccgaggagggcgaccccgagggcgtcctcccacccgggggagtggtc
gacggccgggtgctgtcggcggtcggtgtgcgcctgctcgacaacctgcagcaggtcaag
gagcagcccttgtggcgggtgctggttgccctgtcgatccggcacgtcggccccaccgca
gcgcgggccctggcggggcacttcgccaccatggaggccatccgcgccgcctccaccgag
gagttggcggccgtggagggcgtcggccctaccatcgccgaggccgtgaccgagtggttc
ggcggtgagggcaacggctggcaccggcagatcgtggacacctgggcggcggcgggcgtc
cgcatggccgacgagcgcgacgagtccatcgaacgcaccctcgaggggctcacggtcgtc
gtgaccgggtcgctcgaggggtggtcgcgagacgagtccaaggaggccatcctgacccgg
ggcggcaaggccagcgggtcggtgtcgaagaagaccgactacgtggtcgtcggcgccaac
gccgggtcgaaggccacgaaggccgaggagctcgggctgcccatcctcagcgaggagcag
ttcggcgagctgctggccaccgggcgcgtcgagggtgtgacgcccgaggacgacgcgggg
actgacgcggaagagcccgccgagaaggcctga
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