KEGG   Kwoniella shivajii: 87952889
Entry
87952889          CDS       T10982                                 
Symbol
IL334_000758
Name
(RefSeq) uncharacterized protein
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
ksh  Kwoniella shivajii
Pathway
ksh03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ksh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    87952889 (IL334_000758)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ksh03400]
    87952889 (IL334_000758)
Enzymes [BR:ksh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     87952889 (IL334_000758)
DNA repair and recombination proteins [BR:ksh03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     87952889 (IL334_000758)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT RNA_ligase DNA_ligase_A_C LIG3_BRCT PTCB-BRCT RTT107_BRCT_5
Other DBs
NCBI-GeneID: 87952889
NCBI-ProteinID: XP_062788573
LinkDB
Position
1:join(2005812..2006138,2006194..2006328,2006413..2006549,2006620..2006705,2006776..2006912,2007012..2007219,2007278..2007356,2007416..2007501,2007558..2007593,2007652..2007850,2007912..2007995,2008053..2008074,2008123..2008244,2008301..2008360,2008409..2008497,2008554..2008578,2008630..2008673,2008723..2008844,2008902..2008914,2008964..2009021,2009082..2009115,2009178..2009262,2009318..2009446,2009500..2009602,2009646..2009997,2010055..2010150,2010204..2010254,2010316..2010410,2010470..2010607,2010686..2010762,2010831..2010847)
AA seq 1081 aa
MDNTRYHRHPLPPGQGPPASQVDPDDVVPPAASQPEPPLSQIQTTTLERPSECVNKYPTP
HFSLLCTMMDRLRTEEASKRKDILSRFMELWRIKVGNDLYPLIRLLLPDRDRERPVYNLK
EAMLAKCYIEVLGLDRHSDAAMRLIKWKQPIDGQADSHSGDFARVCYYEIAARSTVEQGQ
LSIDAVNTLLDQMAQGRLKQQEYVPILRKINQQCTAAEQEWIIRIILKDLRISIREKGVF
ACFHPDAGDLFNVCSDLKRVCWTLYKPGQRLEKHQTNIELFRSFLPQLCYRSPSSSHEAI
AKLVGGPNTEFIMEEKLDGERMQLHMRGNGAQWFYCSRKAKDYTYLYGAHIGEGSLTQHI
SGAFQDGVRNIILDGEMLVWDPVLEKYLAFGTLKTAAGDRVNDENAPRPCFKVFDILFLN
DRCLSHKRLSERKRLMRSDRIFRNINDYVGRIEFAEEQKGKNGKDIRAMLERILETKGEG
LVVKKSDAIYQTNSRGADWIKVKPEYSDQMGENLDVLVLGGWWGKGGRTGKISSLLCGLR
IQNEDDGCGRKPEFTTFCSVGSGMSYEDYEWILNKHKAHWKNFDRAKPPPWMQTGIMGLD
DKPDVYIEPENSFVVEVKASEIVPGVGNWGCGYTLRFPRCRYIYFDKASRDHPAGDDSQD
RDMWNCLSLDEFTALLNKPRKRYADAEGGSFRKRRKVVTKKKVQLMTSTRGQKLSDDDIE
SAIFADLTFYIPKGNPTHSKVELEALVHRHGGEFTQAQLSDLSALVVSPDEKSPLVRAQI
RKGVSILKPEWIIESIERRRPLPLIKTLLVFASDEVQEDRYYDKTLSEIDQISSRDGGES
GAASAEEEEEEDEGVEVESAVEGDYDDEDEIVDKREANKTSEQVKMEEEWGLHRSPLRNS
SINTSGPASVEEDDTDDERVVEIKEEEEDYDSHNSTPEPPTENFRLLPVRGVDTTEDEGM
GENADAMNYDEESIFFHLVFYIDTPKNAIKNELKTSLPSKEVFARLSEAEKLLRENGGRI
VNDLQDRKLTHIIMDDEDSGRYAEIIKKTTLPKRKHIVLPSWVTECVDEETLMNEDAHKP
K
NT seq 3246 nt   +upstreamnt  +downstreamnt
atggacaacactcgatatcatcgacatccacttccacctggacaaggaccacctgcttcc
caagtagatccagatgatgtcgttccacctgcagcttcacaacctgaaccacctctttct
caaatccagactaccacgcttgaacgtccatcagaatgcgtcaacaagtatcccacgccg
catttctctttattatgtacaatgatggatagactgagaactgaagaagcaagtaaaagg
aaggacatcttgagtagatttatggaattatggagaatcaaagttgggaatgatctatat
cccttgattaggttactacttcctgatagagatagagaaagacctgtgtataacttgaaa
gaagctatgttggcgaaatgttatattgaagttttaggcttagataggcatagcgatgca
gctatgaggttgatcaaatggaagcaaccaatagatggacaggccgactctcattcaggt
gatttcgctagagtttgttactacgagatagcagctagatcaactgttgagcaaggtcaa
ttatcaattgatgctgttaacactctactcgatcaaatggctcaaggcaggttgaaacaa
caagaatacgttccgatattgagaaagataaatcaacaatgtacagcagctgagcaagaa
tggatcattcgaatcatattgaaggatctaagaatatcaataagagaaaaaggtgttttc
gcatgttttcatcctgatgcaggagatctattcaacgtatgttctgatctgaaaagagta
tgttggacattgtataaacctggtcaaagattggagaaacatcaaacgaatattgagctt
ttcagatcgtttctcccacaattatgttatcgatccccttcttcgtcccatgaagccata
gccaaattggtcggtggtcctaataccgagttcattatggaggaaaaattagatggagag
aggatgcaacttcatatgagaggaaacggggcgcaatggttttactgttcgaggaaagct
aaagactacacgtatctatacggagcccacatcggagaaggtagcttaacacaacatata
tccggagcttttcaagatggtgtcagaaacatcattctggatggtgaaatgctagtctgg
gatcctgtactagagaaatacctagctttcggtacactcaaaacggcggctggagaccga
gtgaacgatgagaacgcaccaagaccatgtttcaaggtattcgatatcctgttccttaac
gatcgttgtctctcgcacaagcgtttgtcggaacgtaaacgtctcatgagatcggatcgc
atattccggaatatcaatgattatgtaggtagaatagaattcgcggaggaacaaaaggga
aaaaacggtaaagatataagggctatgctggaaagaattctggagacaaagggtgaaggc
ttggtagtcaagaagagcgatgcaatatatcaaacgaattcaagaggagcagattggatc
aaagtgaaacccgaatattccgatcaaatgggagaaaatctcgatgttcttgttcttggt
gggtggtggggtaaaggtggaaggacaggaaagatttcaagtcttctttgtgggctacga
attcaaaacgaggatgatggatgcggtagaaaaccagagttcactactttctgttctgtc
ggatccggaatgagctatgaagattatgagtggatcctaaacaaacataaagcacattgg
aagaacttcgaccgagctaagcctccaccttggatgcaaactggtatcatgggcttagac
gataagcctgatgtctatatcgagcccgagaactcgttcgtggtggaagtcaaagcttca
gaaatagtacccggcgttgggaattggggttgcggatatacccttcgattccccagatgt
agatatatctactttgacaaagctagtagagatcatccggcaggtgatgatagtcaagat
agggacatgtggaattgtttgagtcttgatgaattcacggcccttctcaataagcccagg
aagcggtatgcggatgcagaaggtggctcgttccgaaagagaagaaaggttgttactaaa
aagaaagtacaactcatgacttcaactcgaggtcaaaagctttccgatgacgatatagaa
agcgctatctttgctgatctgactttttacataccaaaaggcaatccaacgcattctaaa
gtagagcttgaagctttggtccacaggcatggaggggaattcacacaagctcaattatca
gatttatcagcattggttgtatcccctgatgagaagagtccattggtgagagctcaaatc
cgaaaaggagtgagcattctcaagcccgaatggatcatagagagtatagagagaagaaga
ccactaccattgatcaaaacgcttctcgtattcgcatctgatgaagttcaagaagatcgt
tactatgataaaaccttatctgagatcgatcaaatctcgtcccgggatggtggtgaatca
ggagcggcttcagcagaggaagaagaagaagaagacgaaggagtggaggtggagtctgca
gtagaaggagattacgatgatgaggatgaaattgtagataaacgcgaagccaacaagact
tctgagcaagtgaaaatggaggaagaatggggattacatagatcaccattacgcaactct
tcgatcaatacgagtggacctgcaagtgtagaagaggatgatactgacgatgaaagagtc
gttgagatcaaggaggaagaagaagattatgatagtcacaattcgacgcctgagccacct
actgaaaatttccgtctgttacctgtcagaggtgttgatacgaccgaggatgaaggaatg
ggtgagaatgcagatgccatgaattacgatgaagaaagcatcttctttcatctggtgttc
tatattgacacccctaaaaacgcgattaagaatgagttgaaaacttcattgccatcgaag
gaggtgtttgccaggttgtccgaagcagaaaagcttcttcgtgaaaatggtggaaggata
gtgaatgatttgcaagataggaagttgactcatatcattatggatgatgaggattcagga
agatatgctgaaataattaagaagaccacattgccgaagaggaaacatattgttcttcct
agttgggtgactgagtgtgtagatgaagaaacgttgatgaatgaagatgctcataaacct
aaataa

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