Kwoniella shivajii: 87955518
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Entry
87955518 CDS
T10982
Symbol
IL334_003387
Name
(RefSeq) uncharacterized protein
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
ksh Kwoniella shivajii
Pathway
ksh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ksh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
87955518 (IL334_003387)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksh03019
]
87955518 (IL334_003387)
03032 DNA replication proteins [BR:
ksh03032
]
87955518 (IL334_003387)
Messenger RNA biogenesis [BR:
ksh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
87955518 (IL334_003387)
mRNA cycle factors
Common to processing body (P body) and stress granule
87955518 (IL334_003387)
DNA replication proteins [BR:
ksh03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
87955518 (IL334_003387)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN_4
EST1_DNA_bind
Motif
Other DBs
NCBI-GeneID:
87955518
NCBI-ProteinID:
XP_062791171
LinkDB
All DBs
Position
4:complement(join(1073212..1073853,1073941..1075240,1075329..1075958,1076038..1076262,1076332..1076931,1076989..1077102,1077166..1077302))
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AA seq
1215 aa
AA seq
DB search
MEDPTPLAGPSRPRRQVDNADIANKIVALQRKNASLVGSESRPGTSRPSRRDVPERERHR
NILPQIGVLPPSGQSLGRAVPPPSPSSSRNTPRLPSSPRRTHPHASSRPSAEIQDEYSRG
PGSKSSSSRALFDPSRPTVPQLAKLDRSPRLPSSSEDEVPRRRVESRRNESSNIGKKLFD
PTIHDPLHFQPRPPITTPIPESSELGSGSGSTSSRLLLRRGVPGVVRTAEEEADRERERR
KRREGSERGSLPSKRKDSDTRSKGSRSSEGSESLKDRERGRNNGDTGVKPILKKIHDEIK
ELESELIEVHRKMALDPEAGIKVLLDGKGLADSYSRDRKDIIDDSDTAAWIDLITKHKRL
AELHDHFLITLYDPLVPSSYHQLSVKYNIPSRLWQTAFHSLLERLRQAWMSGHPTALDFL
TDVVYDAYRFYSELLENQALSNFRTAWIEALGDLARYRMTIASYVQEGPTTSSVQSHSQT
QKLGRIDMPEEGNIEEENRVIPSGASIGAEVAQSWDVEDKETWRTTARDWYTMGITEKPG
EGRLHHHLALLCRDVKGQEGRALHHFVKSLTVTHEFPTARESILPLFDSALQNQRSLPEA
TAMDLFLRLHGMLFTRISLDDFSSVMSRYMERLEEDAKLDGFSRKASIGQTEWMMMASVG
LGSVMQYGANNGVIRKGFSQEGAERRRAQALVVDEDGEGDDVDNGPTDSLAVDGYAPMRT
VSPIPMNGEMDDPPPITFTNALQLSFSVFDFVLAHPNRIQGFHQVLNPFITIFLTFLATV
FRQPHVGSPLLLFVPWERLAEFANSANMEIVEEKRLANGTALPEDWLLRGNEWVGRRVYE
RGFWKSKSTNGRGSNGVIVQPQPRIGGERFTSEMDVLLANFEPNGDKDISEGIVDDEVGD
LDGPGQINFRRWKRVQWAIGILVKFVDGFELTNDGKVIVEGTLKEKIEELAKEKEKEREE
EKRREKRRLDREREEEMEFELREIDVEDQSDQDDDDELTALRNRRRELQGLLSTPSTANK
STNSRSKKSKRSSLNIVPGYTMLLFDTNVLVDSLGLFSKVVESGQWSVIVPLPVVTELDG
LSKEPAPLGSNAKSSIKYLESTIRTHSLTLKIQTTKGNYLSDLLIRTEMDTLKEYGDPNE
RARTMDDRIIHISSFAQDHFNDRSRLLGMPHAKQEEEQAIKVLVISNDRNLRLMARSRGV
QGVDEKELERILAGV
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggaagatcctactccattagcaggtccaagtagacccaggagacaagtcgataatgcc
gatatcgcaaataagattgttgctctgcaaaggaagaatgctagtttagtaggaagcgaa
tctaggcctggaacgagtcgaccatcaaggagagatgttcccgaaagagagagacatcga
aatatccttcctcaaattggagtcttacccccttcgggacagagtctaggtcgagcagta
ccacctccttctccctcgagttcaagaaatactcctagattaccttcatctccacgtcgt
acacacccgcatgcctcttcgagaccttcagctgagatacaagatgaatattcccgtgga
ccaggaagcaagtcttcatctagtagagctttgtttgatccctcacgtcctacagtccct
caattagctaaattggacagatcgcctcgtctcccttcatcgtcagaagatgaagtacct
aggcgtcgagtcgaatcaagaaggaatgaatcatcgaatatcggaaagaagttatttgat
ccaacaatacacgatccattacattttcaaccacgtccacctatcacaacgccaataccc
gaatcatcagaactcggatctggatctggatctacttcttcaagattattacttcgtaga
ggcgttccaggagtagtaagaactgcagaggaagaagctgatagagaaagagaaaggagg
aagagaagggaaggaagtgaaagaggtagcttaccttcaaaaagaaaagatagtgatacc
agatcgaaaggttcaagaagcagtgaaggtagcgaaagtcttaaagatagagaaagaggt
agaaacaatggtgataccggagttaaaccgatattgaagaaaatccatgatgaaatcaaa
gaactagaatctgaattaatagaagttcatcgaaaaatggcactggatcctgaagctggc
atcaaggttctgcttgacgggaaaggattggctgatagctatagcagagatagaaaggat
attatagatgatagtgatactgctgcttggatagatttgataacgaaacataaacgactg
gctgaacttcatgatcatttcctcataaccctgtacgacccactagtgccatcatcatat
catcagctatcagtgaaatacaatattccttccagactttggcaaacagcatttcattct
ttattggaaagactccgtcaagcatggatgtcaggtcatcctacagcgttagatttcctt
accgacgtggtttatgacgcatatcgattttattccgaattactcgaaaatcaagcttta
tcaaatttccgtaccgcttggatagaagctttaggtgatctagcaagatataggatgacc
atagcttcttacgtacaagaaggcccgacaacgtcctccgtacaaagccattctcaaact
caaaaattgggtaggatcgatatgccagaagaagggaatatcgaagaagagaatagagtc
attccttcaggtgcaagtataggtgctgaagtagctcaatcttgggatgttgaggacaaa
gaaacttggagaacaacagctagagattggtatactatgggcataactgaaaaacctggt
gaaggtagattacaccatcatctagcgttattatgtcgagatgttaaaggccaagaagga
agagctttgcatcatttcgttaaaagcttaaccgtcacacatgagttcccaaccgcccgt
gaatcgattctacctctcttcgattccgctttgcaaaaccagcgttccttaccagaagca
accgcgatggaccttttccttcgtctacatggaatgctgtttacccgtatatctttggat
gacttctcctctgtcatgtcacggtatatggaaagattagaagaagatgccaaacttgat
ggattcagccggaaagccagtatcggccaaactgaatggatgatgatggcttcagtcggc
ttaggcagtgtcatgcaatatggtgctaataacggagtgatcagaaaagggttttctcaa
gaaggcgccgagcgaagaagagctcaagctttagttgtcgatgaagatggcgaaggcgac
gatgttgacaatgggccgactgattcactcgccgtcgatggctatgcaccgatgagaaca
gtttctcccatacctatgaatggtgaaatggatgatcccccacctatcacattcacaaat
gctcttcaactgtcattctcggtattcgacttcgttctagctcatcccaatcgaatccaa
gggtttcatcaagttttaaatcctttcattacgatatttctcacttttctagcaacggta
tttcgccagcctcacgttggatcacctttattactattcgtaccttgggaaagattagca
gaattcgcaaactcagcgaatatggaaatcgttgaagaaaaaagattagctaatgggact
gcattacctgaagattggttattacgtggtaatgaatgggttggaagaagagtttacgaa
agaggattttggaaatctaaatcaacgaatggaaggggatcaaatggtgtcattgttcaa
cctcaacctcgaataggtggagaaaggtttacatctgaaatggacgttctgttagctaat
tttgaacctaatggagataaagatatatctgaaggtatagtggatgatgaagttggtgat
ttagatggtccgggtcagatcaatttcagaagatggaaaagagtccaatgggcaataggc
attctggttaaattcgttgatggcttcgaattgacaaatgatggtaaagttatcgtggaa
ggtacgctgaaagagaagattgaggaattagctaaagagaaggaaaaagagagggaagaa
gagaagagaagggagaagagaagattagatcgagaaagagaagaagaaatggagtttgag
ttaagagaaatcgacgtcgaagatcaaagtgatcaagatgatgatgacgagttgactgct
ttgagaaaccgtcgtcgagaactacaaggtctcctttctactccttctaccgccaacaaa
tctaccaattcccgatcgaagaaatccaagcggtcatcactcaacatcgtccctggatat
actatgctcttgttcgataccaacgtcttggttgattctcttggattattcagtaaagta
gttgaaagtggacaatggagtgtgattgttccattaccagtagtgactgaattagatgga
ttatcaaaagaaccggcacctttaggttccaacgctaaatcttccatcaaatacttggag
tcgaccattcgaacccattctctgaccttgaaaatccaaactacaaaaggaaattaccta
tctgatctactgataaggacggaaatggacactttgaaagaatatggtgatccaaatgaa
agagctcgaacgatggacgataggattatacatatctcatcttttgctcaagatcacttc
aacgatagatcgagattattgggtatgccacatgccaaacaagaagaagaacaagcaatc
aaagttttggtcatttcaaatgacagaaatttgagattgatggctaggtcaagaggtgtt
caaggtgttgatgagaaggaattggaaaggatcttggcgggggtataa
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