Kribbella soli: OG809_35400
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Entry
OG809_35400 CDS
T09724
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ksl
Kribbella soli
Pathway
ksl03030
DNA replication
ksl03410
Base excision repair
ksl03420
Nucleotide excision repair
ksl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ksl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OG809_35400 (ligA)
03410 Base excision repair
OG809_35400 (ligA)
03420 Nucleotide excision repair
OG809_35400 (ligA)
03430 Mismatch repair
OG809_35400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ksl03032
]
OG809_35400 (ligA)
03400 DNA repair and recombination proteins [BR:
ksl03400
]
OG809_35400 (ligA)
Enzymes [BR:
ksl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OG809_35400 (ligA)
DNA replication proteins [BR:
ksl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OG809_35400 (ligA)
DNA repair and recombination proteins [BR:
ksl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OG809_35400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OG809_35400 (ligA)
MMR (mismatch excision repair)
DNA ligase
OG809_35400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OG809_35400 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
DNA_ligase_ZBD
RNA_ligase
HHH
PTCB-BRCT
IclR
Motif
Other DBs
NCBI-ProteinID:
WUJ70372
LinkDB
All DBs
Position
7205867..7207855
Genome browser
AA seq
662 aa
AA seq
DB search
MDVGERIQELADQIVVLRDAYYRGSPSVADAEYDAIEDELRSLIEANPELAPDPNPLDQV
GAPAVLHAPVRHSRPMLSLEKATRPEQVEAFFSRFPGQSVVVMPKLDGLSLALVYENGRL
ARAVTRGDGTTGDDVTPLVRALTDGVPAKLDVQDRVEVRGEAVMLRSTFAAYNAAHPDKP
LINPRNAAAGTLRAKDPATVAERRLQFLAFDLLTDSADTDLERALTTMGFTVADMRHCDD
AAAAQTVITSIEQRRNDLDYDLDGAVLRLADRDAFAAAGTRSSSPRGALAFKFAAEEKTT
VLADVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQEVIKARDIKIGDTVLVRRAGD
VIPFVAGVLDASKRTGDEQDIVPPVVCPSCGFPLTEQGNSRELFCTNVSCPAQTVRRLIH
WASRAAADIDAIGGVWIERLAEAGILENPSDFYHLTAERLLEFDRIGEVSAARMIESIDT
SRQVGLRRAMIGLAIPMASEGTAARLCRAGFGSLEAVADAGEEGLVAVDDIGPKVAASLI
EHLTRLRPELERLREAGVSLDVREEDLPPVVAAGAPLAGKTVVVTGSISDPRSGEKVARP
AFQRLCEKAGATIASSVSASTDLLITGADVGASKLTKAEKLGVTVVDQSEIWQQLQAADL
LN
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
gtggatgttggggagcggattcaggaacttgccgatcagatcgtcgtactgcgggacgcg
tattaccgcggctcgccgtcggtggccgacgcggagtacgacgcgatcgaggacgagctg
cggtcgctgatcgaggccaacccggagctcgccccggacccgaacccgctcgaccaggtt
ggtgcgccggccgtgttgcacgcgccggtccgacactcgcggccgatgctgtcgctggag
aaggcgacccggccggagcaggttgaggcgttcttcagccgtttcccgggccaatccgtc
gtcgtgatgccgaagctggacggcttgtcactcgctctggtctacgagaacggccgcctg
gctcgagcggtcacccgcggcgacgggacgaccggcgacgacgtgaccccgctggtgcgg
gcgctcacggacggagtcccggccaagctcgacgtgcaggaccgtgtcgaggtgcgcggt
gaggcggtcatgctgcgctccacgttcgcggcgtacaacgccgcccaccccgacaagccg
ctgatcaacccgcggaacgccgccgccggcacgctgcgcgccaaggacccggccacggtc
gccgagcggcgcctgcagttcctcgccttcgacctgctcaccgacagcgccgacacggac
ctcgagcgtgcgctcaccacgatgggcttcaccgtcgccgacatgcggcactgcgacgac
gccgccgcggcgcagacggtcatcacctcgatcgagcagcgacgcaacgacctcgactac
gacctcgacggcgccgtactgcggttggccgatcgcgatgccttcgctgccgcgggcacc
cggtcgagctcgccccgcggtgcgttggcgttcaagttcgccgccgaggagaagacgacc
gtgctggccgatgtcgtctgggacgtcggcaagaccggcaagatcgcgccggtcgcctgg
ctcgagcccgtcttcgtcggcggtacgacggtcacgcgcgcgaccctggccaaccaggag
gtgatcaaggcccgcgacatcaagatcggcgacacggtcctggtgcgccgggccggcgac
gtgatcccgttcgtggccggcgtgctcgacgcctcgaagcgcaccggcgacgagcaggac
atcgtgccgccggtcgtctgcccgtcctgcggcttcccgttgaccgagcaaggcaacagc
cgcgagctgttctgcaccaacgtctcctgcccggcccagaccgtgcggcggctgatccac
tgggcctcgcgcgccgcggccgatatcgacgcgatcggcggggtctggatcgagcggctg
gccgaggccggaatcctcgagaacccgtcggacttctaccacctgaccgccgagaggctg
ctggagttcgaccggatcggagaggtctcagcggcgcggatgatcgagtcgatcgacacc
agccgtcaggtcggcctccgccgcgcgatgatcggcctcgcgatcccgatggcctccgag
ggcaccgcggcccggctgtgccgcgcgggcttcggctcgctcgaggcggtcgcggacgcc
ggcgaggaaggcctcgttgccgtcgacgatatcggcccgaaggttgctgcctcactcatc
gagcacctgacccggctacggcctgagctcgagcggctgcgggaagcgggcgtctcgctc
gacgtacgcgaggaggatctcccgccggtcgtcgcggccggtgcgccgctggccggcaag
accgtcgtcgtgaccggatccatcagcgacccgcgctccggcgaaaaggtggcgcggccg
gcgttccagcggctctgcgagaaggccggcgcgaccatcgcctcgtcggtctcggccagc
accgaccttctcatcaccggcgccgacgtcggcgcctcgaaactcaccaaggccgagaaa
ctcggcgtcaccgtcgtcgaccagtccgagatctggcagcaactccaggccgccgacctg
ctgaactag
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