Kribbella soli: OG809_40510
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Entry
OG809_40510 CDS
T09724
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ksl
Kribbella soli
Pathway
ksl03030
DNA replication
ksl03410
Base excision repair
ksl03420
Nucleotide excision repair
ksl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ksl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OG809_40510 (ligA)
03410 Base excision repair
OG809_40510 (ligA)
03420 Nucleotide excision repair
OG809_40510 (ligA)
03430 Mismatch repair
OG809_40510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ksl03032
]
OG809_40510 (ligA)
03400 DNA repair and recombination proteins [BR:
ksl03400
]
OG809_40510 (ligA)
Enzymes [BR:
ksl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OG809_40510 (ligA)
DNA replication proteins [BR:
ksl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OG809_40510 (ligA)
DNA repair and recombination proteins [BR:
ksl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OG809_40510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OG809_40510 (ligA)
MMR (mismatch excision repair)
DNA ligase
OG809_40510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OG809_40510 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
Prot_ATP_ID_OB_C
HHH_3
BRCT_2
HHH_8
Col-Pyo_DNase
DUF7501
Motif
Other DBs
NCBI-ProteinID:
WUJ71355
LinkDB
All DBs
Position
complement(8278644..8280755)
Genome browser
AA seq
703 aa
AA seq
DB search
MGTEEEKGAATPEARVRHAELSTEIDDHRARYYLANPIISDADFDTLMHELQDLEEKYPE
LRTPDSPTQKVGIPISTLFSPVEHPMRMESLANAFSAEQMEAWAKRLEREVTLQQIHDSG
FICELKVDGLALDLVYENGKLVTGATRGDGRTGEDVTPNVRTIKSIPNQLKGKDLPSFLE
VRGEVYFRVEDFEELNAQLVEAGKDVFSNPRNSAAGSLRQKDPRVSAGRPLRFVVHGLGK
VEGHHIGRLSEAYEQLHAWGLPVSDRARRVGTLKEVNEFIAYYGENRHSVDHEIDGVVVK
VDEVDLQRALGSTSSAPRWAIAFKYPPEEVNTKLIEIEVNVGRTGRVTPFAHMEPVRVAG
STVEYATLHNAKEVARKDVRPGDTVVLRKAGDVIPEVLGPVVDLRPKGLPAWEMPTRCPW
CDTVLAPAKESDVDIRCPNSQYCQGQLRERLFYLAGRSAFDIEGLGFKAADALITGGLIV
NESDLFGLTEEKLAESAFFTTKAGALSANARKLLANLEEAKTKPLSRALVALSIRHVGPT
AAAALTEAFDNIDDIRAASEEQLAEIEGVGPTIAQAMIEWFQVPWHQEIVDNWLAAGVIM
REERTGPSLPQILTGLSVVVTGTVEGFSRDEATEAIVGRGGKVASSVSKKTSFVVVGDSP
GSKYDKAVQLGVPILDAAGFEVLLADGAEAASGVATTGSPDAG
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggaggaggagaagggcgctgcgacgcctgaggcgcgggtgcggcatgcggag
ttgagcacggagatcgacgaccaccgggcgcggtactacctggccaatccgatcatctcg
gacgccgacttcgacacgctgatgcacgagctgcaggacctcgaggagaagtatcccgag
ctacggaccccggactcgcccacccagaaggtcggcatcccgatctccacgctgttctcc
ccggtcgagcacccgatgcggatggagagcctcgcgaacgcgttctccgccgagcagatg
gaggcctgggcgaaaaggctcgagcgcgaggtcaccctccagcagatccacgacagcggg
ttcatctgcgagctcaaggtcgacggcctcgccctcgacctggtgtacgagaacggcaag
ctcgtcaccggcgcgacccgcggcgacggccgcaccggcgaggacgtcacgcccaacgtc
cgcacgatcaagagcatcccgaaccagctgaagggcaaggacctcccgtcgttcctcgag
gtccgcggcgaggtctatttccgcgtggaggacttcgaggagctcaatgcgcagctcgtc
gaggccggcaaggacgtcttctccaacccgcgcaacagcgccgccggatcactgcgccag
aaggacccccgggtctccgccggccgcccgctgcgcttcgtcgtccacggactcggcaag
gtcgaggggcaccacatcggccgcctctcggaggcgtacgagcagctgcacgcgtggggc
ctgccggtcagcgaccgcgcccgccgggtcggcacgctgaaggaagtcaacgagttcatc
gcgtactacggcgagaaccgccactcggtcgaccacgagatcgacggtgtcgtggtgaag
gtcgacgaggtcgatctccagcgtgcgctcgggtccacgtcgagtgcgccacgctgggcg
atcgcgttcaagtacccgccggaagaggtcaacaccaagctgatcgagatcgaggtgaac
gtcggccgcaccggtcgcgtcaccccgttcgcgcacatggagccggtccgcgtcgccgga
tccaccgtcgagtacgcgaccctccacaacgccaaggaggtcgcccgcaaggacgtccgc
cccggcgacaccgtcgtactgcggaaagcgggcgacgtgatccccgaggtgctcggaccg
gtggtcgacctgcgtccgaagggcctgccggcgtgggagatgccgacgcgctgcccgtgg
tgcgacacggtgctggccccggccaaggagtcggacgtcgatatccgctgcccgaactcg
cagtactgccaggggcagttgcgtgagcggctgttctacctggccgggcggtccgcgttc
gatatcgaggggctcgggttcaaggcggccgacgcgttgatcaccggcggcctgatcgtc
aacgagtccgacctgttcgggttgaccgaggagaagctcgccgagagcgccttcttcacc
accaaggccggcgccctgtccgcgaacgcgcggaagctgctggcgaatctcgaagaggcc
aagaccaagccgttgtcgcgcgccctggtcgcgctgtcgatccggcatgtcggaccgaca
gcggccgccgcgctgaccgaggcgttcgacaacatcgacgacatccgtgcggcgagcgag
gagcagctggccgagatcgagggcgtcgggccgacgatcgcgcaggcgatgatcgagtgg
ttccaggtgccgtggcaccaggagatcgtggacaactggctcgcggccggcgtcatcatg
cgcgaggagcgcaccgggccgagccttccgcagatcctgaccggcctgtcggtcgtggtg
accggcaccgtcgagggcttcagccgggacgaggcgaccgaggcgatcgtgggacgcggc
gggaaggtcgcgagctcggtgtcgaagaagacgtcgttcgtggtggtcggtgactcgccg
ggatcgaagtacgacaaggcggtccagctcggagtaccgatcctcgacgcggccggcttc
gaggtcctgctggccgacggcgccgaggcggcgagcggggtcgcgacgaccgggtcaccg
gacgcgggataa
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