Candidatus Kinetoplastidibacterium kentomonadis: CKSOR_00462
Help
Entry
CKSOR_00462 CDS
T05428
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kso
Candidatus Kinetoplastidibacterium kentomonadis
Pathway
kso03030
DNA replication
kso03410
Base excision repair
kso03420
Nucleotide excision repair
kso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CKSOR_00462 (ligA)
03410 Base excision repair
CKSOR_00462 (ligA)
03420 Nucleotide excision repair
CKSOR_00462 (ligA)
03430 Mismatch repair
CKSOR_00462 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kso03032
]
CKSOR_00462 (ligA)
03400 DNA repair and recombination proteins [BR:
kso03400
]
CKSOR_00462 (ligA)
Enzymes [BR:
kso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CKSOR_00462 (ligA)
DNA replication proteins [BR:
kso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CKSOR_00462 (ligA)
DNA repair and recombination proteins [BR:
kso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CKSOR_00462 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CKSOR_00462 (ligA)
MMR (mismatch excision repair)
DNA ligase
CKSOR_00462 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CKSOR_00462 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Ribosomal_L31e
Zn_ribbon_PADR1
BRCT_2
Ish1
Post_transc_reg
Motif
Other DBs
NCBI-ProteinID:
AWD32574
UniProt:
A0A3Q8ERI0
LinkDB
All DBs
Position
complement(483012..485057)
Genome browser
AA seq
681 aa
AA seq
DB search
MSSSNKKIDDYKRIEFLRNEINKHNILYYVYDNPVIDDHAYDALMKELIALESKYPDSVN
SYSPTQRVGGSPVSYFKNIKHSIPMLSLNNAFNIKEVESFDQRMMKYIDQYKFDSNINKY
FCELKLDGLAINIRYINGILEYASTRGNGLIGEDVTSNIRTIKSIPLKLSGTPPKILEVR
GEVIMEYNDFHKLNQYQISIGNKPFVNTRNATAGTIRNFDPNITYQRSLKFFAYGCGLIE
NNDKFYVSSVDDQCNLLNWLSSFGIPVNVKYSSYANTIDELINFHKKAYDLRRNLPYAID
GVVYKINSLELQNKIGFSSRAPKFSIAHKFLAEEAITKLWKIEFQISRTGIVTPVAKLEP
IFVGGVNISSATLHNENEIIRKDIKIGDFVIVRRAGDVIPEVVGPVLNLRNKVEDFHMLN
FCPICKSKIVKFTGENVYRCTGKLFCKAQLVQQLLHASSRNALNIVGLGEKIISQLVNKN
IVKSITDIFNLSLENLIQLDRVSNKLAEKILLSIKKSKNTSLNKLLFALGIEHIGEHISK
ELSKKFNNLDDIISAKEEELLSVNCIGKVAKESILTFFSIPENIKIVKELEKNGVVISKI
SNKILKNSIFKDKIIVLTGKIENLSRVEVENIVNNLGGRVNNSISKNTSYLIYGNNYGEK
FYKADQLGIKKIYYKDFLKMI
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgagctcaagtaataaaaaaatagatgattataaaagaatagaatttctaagaaatgaa
attaataaacataatatattatattatgtttatgacaatcctgttattgatgatcatgca
tatgatgctttaatgaaagaactaatagcattagaaagtaaatatcctgattcagtaaat
tcatattctccaacacaaagagtaggaggatctccagtttcatactttaaaaatattaaa
cattctattccaatgctttcattgaataatgcttttaatataaaagaagtagaatcattt
gatcaacgtatgatgaaatatattgatcaatacaagtttgattctaatataaataaatat
ttttgtgaattaaaattagatggattagctattaatattagatatattaatggtattttg
gaatatgcttctacaagaggtaatggtttaattggagaagatgttacatctaatataaga
acaatcaaatctataccattaaaattatctggaacgcctcctaaaatattagaagttaga
ggagaagtcattatggaatataatgactttcataaactcaatcaatatcaaattagtatt
ggtaataagccattcgtaaatactcgtaatgctactgctggtactataaggaattttgat
ccaaatattacttatcaaagatcattaaaattttttgcttatggatgtggtttaattgaa
aataatgataaattttatgtatcttcagtagatgatcaatgtaatttattaaattggtta
tcttcgtttggtatacctgtaaatgttaaatacagtagctatgcaaatactattgatgaa
ttaattaattttcataaaaaagcttatgatttaagaaggaatttaccatatgcaattgat
ggagtagtatataaaattaattctttagaattacaaaataaaataggtttttcttctcgt
gcaccaaaattttcaatagctcataaatttttagcagaagaagcaataactaaattatgg
aaaattgaatttcagattagtagaactggaatagtaacacctgttgctaaattagaacca
atttttgttggaggtgtaaatatatctagtgcaacactacataatgaaaatgaaattatt
cgtaaagatattaaaataggagattttgttattgttagacgtgctggagatgttatacct
gaagttgtaggtccagttttaaatttaagaaataaagtagaagattttcatatgttaaat
ttttgtcctatatgtaaatctaaaattgttaaatttacaggcgaaaatgtatatcgttgt
actggtaaattattttgtaaagcacagttagtacaacaattattacatgcttctagtcgt
aatgcactgaatatagttgggttaggtgaaaaaatcataagtcaacttgtaaataaaaat
attgtgaaatctattacagatatctttaatctttcattagaaaatttaatacaattggat
agagtatctaataaattagcagaaaaaatcttattatctataaaaaaatctaaaaatact
agtttaaataaattattatttgctttaggaattgaacacataggtgaacatatttctaaa
gaattatccaaaaaatttaataatttagatgatattatttctgcaaaagaagaggaatta
ctctcagtaaattgtataggaaaagttgctaaagaatctattcttacatttttttctata
cctgaaaatattaaaattgttaaagaattagaaaaaaatggagtagttatttctaaaatt
tctaataaaattttaaaaaattcaatctttaaagataaaattatagtcttgacaggaaaa
attgaaaatttatctcgagtagaagtagaaaatattgtaaataatttaggtggccgagtt
aataattcaatatcaaaaaatacatcttatttaatatatggtaataattatggtgaaaaa
ttttataaagctgaccaattaggcattaaaaaaatttattacaaagattttttaaaaatg
atttag
DBGET
integrated database retrieval system
