Candidatus Kuenenia stuttgartiensis: KSMBR1_2858
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Entry
KSMBR1_2858 CDS
T05435
Symbol
lig
Name
(GenBank) strongly similar to DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kst
Candidatus Kuenenia stuttgartiensis
Pathway
kst03030
DNA replication
kst03410
Base excision repair
kst03420
Nucleotide excision repair
kst03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KSMBR1_2858 (lig)
03410 Base excision repair
KSMBR1_2858 (lig)
03420 Nucleotide excision repair
KSMBR1_2858 (lig)
03430 Mismatch repair
KSMBR1_2858 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kst03032
]
KSMBR1_2858 (lig)
03400 DNA repair and recombination proteins [BR:
kst03400
]
KSMBR1_2858 (lig)
Enzymes [BR:
kst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KSMBR1_2858 (lig)
DNA replication proteins [BR:
kst03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KSMBR1_2858 (lig)
DNA repair and recombination proteins [BR:
kst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KSMBR1_2858 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KSMBR1_2858 (lig)
MMR (mismatch excision repair)
DNA ligase
KSMBR1_2858 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KSMBR1_2858 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
HHH
BRCT_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
SOH05339
UniProt:
A0A2C9CHG2
LinkDB
All DBs
Position
MBR1:3068975..3070999
Genome browser
AA seq
674 aa
AA seq
DB search
MSSTVKEKIEQLRCIIRYHDHKYYVENNPEISDYEYDQLLRELQNLESAHPELITPDSPT
QRVADQPISQFPAVEHKKPMLSIDNTYSNEELKEFDQRIKRMAGINANTDIEYVVELKID
GIAITLWYENGLFVRGATRGDGFRGDDVTANLKTIRQIPLKLSVSGAHYKIPPVVEIRGE
IYLPNKEFQRINEEREEKGEIQFANPRNAAAGSLKLLDPRITAKRRLKMFAYVIGYVEGM
ELESHVQCLDFVKAIGLPVNPYTQLCKNIDEVVRYCREWDKRRGILDYMVDGMVIKVNSL
ALQEQLGATSKAPRWMISFKFQPEQAITRIEEIVVQVGKTGTLTPVANLTPVLLAGTTVS
RASLHNFDEVKRKDVRVGDHVVVQKAGEIIPQVVKVLEEKRSGREKVFVEPACCPVCKGP
VHRDNSEVYLRCHNPLCKAQTKRRIQYFAGRDAMDIEGLGPAIIEQLVDKGLVDDYSDIF
SLQYDDLVNLERMGKKSSSNLISAIENSRGRDLDRLICALGIHNVGLHTAEVLSDHFDSL
GKLSNATADELEKIHEIGPVVAQSIVEFFQNKHTQEIIKKLLAKGVNTGKLASDMPRKSS
KVAGKSFVITGKLQKYSRSDAEKLIKRLGGRVSSAMSRKTNYLIAGEDPGSKLDKAKELG
VVILDEEAFYLLVG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgtcaacggtaaaagaaaaaatagaacaactccgctgcattataagatatcacgac
cataagtattatgtggaaaataatcctgagatttctgattatgaatatgatcaactactc
agggagttacagaaccttgagagcgcacatcctgaattaataactccggattcccctacc
caaagggtcgcagaccaaccaatcagtcagtttcccgccgtggaacataagaaaccaatg
ctgagcatcgataacacctattcaaatgaggagttgaaggagtttgatcaaagaataaaa
cgcatggccggcatcaatgccaatacagatattgaatatgtcgttgaattaaagattgac
gggatagctattacactttggtatgaaaacggattatttgtacggggcgccacccgcggt
gatggtttccggggggacgacgtcactgcaaacctcaaaacaatccggcagatcccatta
aaactttccgtatcgggcgctcactataaaataccgccggttgtggaaataaggggagaa
atttatttgccaaataaagagttccagcggataaatgaagaaagggaagagaaaggtgag
attcagttcgcaaatcccagaaatgcggcggcagggtcattaaagcttttagacccccgt
attaccgcgaaaaggcgactcaaaatgtttgcctatgttataggatatgttgaaggaatg
gaattggagtcgcacgtacagtgtcttgattttgtcaaagcgatagggcttccggtaaac
ccgtacacgcaattatgcaaaaatattgatgaggtggtgcggtattgccgcgaatgggat
aaacgacgcggaatccttgactatatggtggacggaatggtcataaaggtgaattccctt
gctcttcaggagcaattaggggcgacaagcaaggcaccccgctggatgatatcatttaaa
tttcagcctgagcaggcgataacaaggattgaggaaattgttgttcaggtagggaaaaca
ggcacgctcacgcctgtagccaatcttacgccggtattgctggcgggtacgacggtaagc
cgcgcttcacttcataattttgacgaagtaaagagaaaagacgtcagggtgggggatcat
gttgttgtacaaaaagcgggagaaattattccgcaagtcgtaaaagtactggaagaaaag
cgaagcggacgggaaaaggtttttgttgaacctgcctgctgtcctgtatgtaaaggccct
gtacaccgggataacagtgaagtatatttgcgctgccacaacccgttgtgcaaggcgcag
acgaaaaggcgcatccaatactttgcgggcagagacgcaatggatatcgaagggcttggc
cccgccattatcgaacaattggtggataaaggcctcgtggatgattattcggacattttt
tccctacagtatgatgaccttgttaatcttgagcgcatggggaaaaaatcctcatccaat
cttataagtgcgattgaaaatagccgtggacgtgaccttgaccgtctgatttgcgctttg
ggcatacacaacgttggtttgcacaccgcagaagtgttatcggatcattttgattctctc
ggaaaactgtcaaatgcaaccgcagatgaactggaaaagatacatgagatagggcccgtt
gtagcacaaagcattgttgaattttttcaaaacaaacatacgcaggaaattataaaaaag
cttcttgcaaaaggagtaaacaccggaaaactggcgtcagatatgccacggaaaagcagt
aaagtagcgggaaaatcttttgtaataaccggcaaactgcaaaaatattcccgcagcgat
gcggaaaaacttatcaagcgcctcggggggagggtttcgtctgccatgagcaggaagaca
aattatctcattgccggagaagaccccggttcaaagctggacaaggcgaaagaacttggc
gtggttattcttgacgaagaagcattttatttgttggtagggtaa
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