Kushneria konosiri: B9G99_11010
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Entry
B9G99_11010 CDS
T04839
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kus
Kushneria konosiri
Pathway
kus03030
DNA replication
kus03410
Base excision repair
kus03420
Nucleotide excision repair
kus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B9G99_11010 (ligA)
03410 Base excision repair
B9G99_11010 (ligA)
03420 Nucleotide excision repair
B9G99_11010 (ligA)
03430 Mismatch repair
B9G99_11010 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kus03032
]
B9G99_11010 (ligA)
03400 DNA repair and recombination proteins [BR:
kus03400
]
B9G99_11010 (ligA)
Enzymes [BR:
kus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B9G99_11010 (ligA)
DNA replication proteins [BR:
kus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B9G99_11010 (ligA)
DNA repair and recombination proteins [BR:
kus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B9G99_11010 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B9G99_11010 (ligA)
MMR (mismatch excision repair)
DNA ligase
B9G99_11010 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B9G99_11010 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ARS53319
UniProt:
A0A2Z2H788
LinkDB
All DBs
Position
2376210..2378270
Genome browser
AA seq
686 aa
AA seq
DB search
MCAKKSADPIAEEIRTLRAQLEEANYRYYVEDAPAIPDAEYDRLLRRLQEIEAEHPERVT
ADSPTQRVGAPPAEGFPEVRHAVAMLSLDNAFDEQEVRAFARRVAERLETDEPSIRFCCE
PKLDGLAVSLVYENGLLVQGATRGDGRTGEGITANLRTLKSIPLRLRGDDLPALLEVRGE
VYMSHSGFEKLNDDARARDSKVFANPRNAAAGSLRQLDPNIAAARPLEFCAYQVARIDDA
WLKPCHSALMALLRDLGFRTSPEIDVVTGADGLVDFCDRMGQRREQLDYDIDGAVLKVDD
LRAQRELGFVSRAPRWAMAFKFPAQEQTTVIRDVTFQVGRTGRLTPVARLEPVQVAGVTV
SNATLHNMDEIERLDARINDTVIVRRAGDVIPQIVSVVMDARPDNAQIIEMPEQCPVCDS
RVERLGDEVDARCSGGLFCPAQRKEALKHFASRRALDIDGLGTKLIDALVEREWVKSPAD
LFRLEAVQLAELPRMAQKSADNLVASLERSRHTTLARFIYALGITEVGEATANALVLHFG
ELQRIMDASMEALEAVADIGPVVAGHIHTFFAEAHNRDTIEDLIRVGIDWEEVEVGEREQ
PLTGQTWVLTGTLETLTRDEAKARLVALGAKVSGSVSKKTHAVVAGEAAGSKLEKARQLG
VDVMDEQALLVFLDRHENTSSSESDS
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgcaaaaaaaagcgctgacccgattgccgaggagatcaggacacttcgtgcgcag
ctcgaagaggccaactatcgctattacgtcgaggatgcgccggccattcccgacgccgag
tatgatcgcctgctgcgccgccttcaggagatcgaggccgaacatccggagcgggtcacg
gcggattcgcccacccagcgcgtgggcgcaccgccggccgaggggtttcccgaagtgcgt
cacgccgtggccatgctgtcactggacaacgccttcgatgagcaggaggtccgcgccttt
gcacggcgagtggccgaacggcttgaaaccgacgagccgtcgattcgtttttgctgcgag
cccaagctggacgggctggccgtctcgctggtgtatgaaaatggcctgctggtgcagggg
gcgacccgaggtgatgggcgtaccggtgaaggcattacggccaacctgcgcacgctgaaa
tccatcccgcttcggttgcggggtgatgatctgccggcattgctggaagtgcgtggcgag
gtctacatgagccactcggggtttgagaagctcaatgacgatgcgcgtgcccgggacagc
aaggtgtttgccaatcctcgtaacgctgccgccggcagcctgcgacagctcgaccccaat
atcgctgcggcccgaccgctggagttctgcgcttatcaggtcgcccgcattgatgatgcg
tggctaaagccctgccactcggcgctgatggccctgctgcgcgatctgggatttcgcacc
agccccgagattgatgtggttaccggcgctgatgggctggtcgacttctgcgacagaatg
ggccagcggcgcgagcagctggactacgacatcgacggtgccgtactcaaggtcgatgat
ctgcgtgcccagcgcgaactcggttttgtttcgcgtgcgccgcgctgggcaatggcgttc
aagtttccggcccaggagcagactacggtcattcgagatgtcacctttcaggtcggacgc
accgggcggctgacgccggtggccaggcttgagcccgtacaggtagccggtgtgacggtg
tcgaacgccacactgcacaacatggatgagatcgaacgccttgatgctcgcatcaatgac
accgtgatcgttcgtcgtgccggtgatgtcatcccgcagattgtcagcgtggtgatggat
gcccgcccggacaacgcgcagatcatcgagatgcccgagcagtgtccggtatgtgattca
cgggtggagcgtcttggtgacgaggtggatgctcgctgctcgggcgggcttttctgcccg
gcccagcgcaaggaggcgctcaagcacttcgccagccgccgagcgctggatatcgacggg
ctgggcaccaaactgattgatgcgctggtcgagcgggagtgggtgaaaagcccggccgat
ctgtttcgccttgaagcggtgcagcttgccgagctgccccgcatggcgcaaaagtcagcc
gataatctcgtggcctcgcttgagcgttcaagacataccacgctggcccgctttatctat
gcactcggcattactgaagtcggcgaggcgactgccaatgcgctggtgctgcattttggc
gagctgcagcggatcatggatgcctcaatggaagcgctggaggcagtggccgatattggc
ccggtggtggccggtcatatccataccttctttgccgaggcgcacaatcgcgacaccatc
gaggacctcatccgggtcggcatcgactgggaagaggtcgaggtgggagaacgcgagcag
cccctgaccggccagacctgggtgctgaccggcacgctggaaacgctgacccgtgatgag
gcgaaagcgcgactggtggcgctgggggcgaaggtcagcggcagcgtctcgaagaaaaca
cacgcagtggtcgccggtgaggcagccggcagcaagctggaaaaggcccgtcagctgggc
gttgatgtcatggacgagcaggccttgctggtgtttttggaccggcatgaaaatacgtcc
tcatcggagagtgactcatga
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