Kutzneria sp. CA-103260: JJ691_34470
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Entry
JJ691_34470 CDS
T08943
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kut
Kutzneria sp. CA-103260
Pathway
kut03030
DNA replication
kut03410
Base excision repair
kut03420
Nucleotide excision repair
kut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JJ691_34470 (ligA_1)
03410 Base excision repair
JJ691_34470 (ligA_1)
03420 Nucleotide excision repair
JJ691_34470 (ligA_1)
03430 Mismatch repair
JJ691_34470 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kut03032
]
JJ691_34470 (ligA_1)
03400 DNA repair and recombination proteins [BR:
kut03400
]
JJ691_34470 (ligA_1)
Enzymes [BR:
kut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JJ691_34470 (ligA_1)
DNA replication proteins [BR:
kut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JJ691_34470 (ligA_1)
DNA repair and recombination proteins [BR:
kut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JJ691_34470 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JJ691_34470 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
JJ691_34470 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JJ691_34470 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
DNA_ligase_ZBD
BRCT
IclR
Motif
Other DBs
NCBI-ProteinID:
QUQ65723
LinkDB
All DBs
Position
4035982..4037967
Genome browser
AA seq
661 aa
AA seq
DB search
MNTGDRIQELADQIVALRDAYYRGAPLVADAEYDTVEDELRTLIGQHPELAPDPNPLEQV
GAPAVLHAPVRHSRPMLSLEKATKPDQVAAFFERFPGQPMAVMPKLDGLSLAVVYEDGRL
VRAVTRGDGTTGDDVTMLVRALVDGVPERIDAPGRVEVRGEAVMLRSTFAAYNAAHPDKP
LINPRGAAAGTLRAKDPATVAERRLRLFAFDLYTDAASADLEQALQALGLEAADMRLCAD
AEQAQAVIAEIERSRNDRDYDLDGAVLRLANRDAYAAAGARSNSPRGALAYKFAAEEKTT
VLADVVWDVGKTGKIAPVAWLEPVFVGGTTVTRATLANQEVIKARGIRIGDTVLVRRAGD
VIPFVAGVLDESQRTGAEREIVPPTACPSCQAPLTEQGNSRELFCTNVSCPAQTVRRLIH
WASRAAADIEAVGPVWIERLAESGDLENPSDFYALTKDRLLEFDRIGETSATRMIESIAA
SRQVGLRRALIGLAIPMASEGTATRLCRAGFGSLEDVADAGEERLVEVEDIGPRVAASLI
EHLTRLRVELRRLRAYGVSLDVREEDLPPVVAAGAPLAGQTVVVTGAISDPRSGEKVPRP
AFQRLCEKAGATIASSVSANTDLLITGADVGASKLAKAEKLEVRTADQAEVWQQLIEAGI
A
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaccggggaccgcatccaagagctcgctgaccagatcgtggcgctgcgtgacgcc
tactaccggggcgcgccgctggtggccgacgccgagtacgacacggtcgaggacgagctg
cggaccctgatcgggcagcacccggagctggcgcccgacccgaacccgctggagcaggtg
ggcgcgccggcggtgctgcacgcgccggtccggcactcgcggccgatgctgtcgctggag
aaggcgaccaagcccgaccaggtggcggcgttcttcgagcggttccccgggcagccgatg
gcggtcatgcccaagctggacggcctgtcgctggccgtggtctacgaggacgggcggctg
gtgcgggcggtcacccgcggtgacggcaccaccggtgacgacgtgacgatgctggtccgg
gcgctggtcgacggcgtgccggagcgcatcgacgccccgggccgggtggaggtgcggggc
gaggcggtgatgctgcgctccaccttcgccgcctacaacgccgcgcacccggacaagccg
ctgatcaacccgcggggcgcggccgccggcacgctgcgggccaaggacccggcgacggtg
gccgagcggcggctccggctgttcgccttcgacctctacaccgacgccgcctcggccgat
ctggagcaggccctgcaggccctgggcctggaggccgccgacatgcggctgtgcgccgac
gccgagcaggcccaggcggtgatcgccgagatcgaacgcagccgcaacgaccgcgactac
gacctggacggcgcggtgctgcggctggccaaccgggacgcctacgcggcggcgggagcc
cgctccaactcgccgcgtggggcgctggcctacaagttcgccgccgaggagaagaccacg
gtgctggctgacgtcgtgtgggacgtcggcaagaccggcaagatcgccccggtggcgtgg
ctggagccggtgttcgtcggcggcaccacggtcacccgggccaccctggccaaccaggaa
gtcatcaaggccaggggaatccgcatcggcgacacggtgctggtgcgccgggccggcgac
gtgatcccgttcgtcgccggcgtgctcgacgagtcccagcgcaccggcgcggagcgggag
atcgtgccgcccaccgcgtgcccgtcctgccaggcgccgctgaccgagcagggcaacagc
cgggaactgttctgcaccaacgtctcctgcccggcccagacggtgcgccggctgatccac
tgggcctcccgcgcggccgccgacatcgaggccgtcggtccggtgtggatcgagcgcctg
gccgagtccggcgacctggagaacccgtccgacttctacgccctgaccaaggaccggctg
ctggagttcgaccgcatcggcgagacctcggcgacccgcatgatcgagtccatcgccgcc
agccgccaggtcggcctgcgccgggccctgatcgggctggccattcccatggcgtcggag
ggcaccgccacccgcctgtgccgggccggcttcggctcgctggaggacgtcgccgacgcc
ggcgaggaacggctggtcgaggtggaggacatcgggcctcgggtcgctgcctccctgatc
gagcacctcacccggcttcgcgtcgaactccggcggctgcgggcttacggcgtctcgttg
gacgtgcgcgaggaggatctgcccccggtggtcgccgccggcgcgccactggccggtcag
accgtcgtcgtcaccggcgcgatcagcgatccccgctccggtgagaaggtcccccgcccc
gctttccagcgtctgtgcgagaaggccggcgccaccatcgcctcgtcggtctccgccaac
accgacctgctcatcaccggcgccgacgtcggcgccagcaagctggccaaggccgagaag
ctggaggtgcgaaccgccgaccaggccgaggtctggcagcagctcatcgaggccggcatc
gcctga
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