Kushneria phosphatilytica: FY550_04285
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Entry
FY550_04285 CDS
T06200
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kuy
Kushneria phosphatilytica
Pathway
kuy03030
DNA replication
kuy03410
Base excision repair
kuy03420
Nucleotide excision repair
kuy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kuy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FY550_04285 (ligA)
03410 Base excision repair
FY550_04285 (ligA)
03420 Nucleotide excision repair
FY550_04285 (ligA)
03430 Mismatch repair
FY550_04285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kuy03032
]
FY550_04285 (ligA)
03400 DNA repair and recombination proteins [BR:
kuy03400
]
FY550_04285 (ligA)
Enzymes [BR:
kuy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FY550_04285 (ligA)
DNA replication proteins [BR:
kuy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FY550_04285 (ligA)
DNA repair and recombination proteins [BR:
kuy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FY550_04285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FY550_04285 (ligA)
MMR (mismatch excision repair)
DNA ligase
FY550_04285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FY550_04285 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
HHH
Nlig-Ia
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QEL10428
UniProt:
A0A1S1NZG3
LinkDB
All DBs
Position
983406..985466
Genome browser
AA seq
686 aa
AA seq
DB search
MSQRDDDTAREAARLRRELEEANYHYYVEDAPVIPDAEFDRMLRRLQEIEAEHPDLVTVD
SPTRRVGAPPSEGFPEVRHAIAMLSLDNAFNHDEVRAFARRVADRLERDPETIDFCCEPK
LDGLAVSLVYEQGVLVQGATRGDGRTGEGITANLRTLKSIPLRLRGEHPPELLEVRGEVY
MSHSGFERLNEQARETGGKVFANPRNAAAGSVRQLDPQIAASRPLEFCAYQVARIDEARW
ESLHSAQMHGLRQLGFRTSPALEVVTGAEGLIDFCQRLGEKRETLDYDIDGAVMKVDDYR
WQRELGYVSRAPRWAMAFKFPAQEQTTTINDVRFQVGRTGRLTPVAELEPVQVAGVTVAN
ASLHNMDEIARLDARIGDTVIVRRAGDVIPQVVQVIVEKRPQQTRAIEMPAECPVCGSRV
DRAEGEVDAICSGGLFCPAQRKESLKHFASRRALDIDGLGDKLIDQLVELEWVKTPADLF
RLEVARLSELPRVAEKSATNLVNAIDRSRQTTLTRFIFALGIPEVGEATAGALAAHFGTL
ERLMAADETALTAVSDIGPIVASHIHAFFAEQHNRDIIDDLRRMGVTWEEVEIIDRPQPL
AGQTWVLTGTLEAMTRDEAKARLTALGAKVSGSVSKKTHAVVAGPGAGSKLERAHELELT
VYDETEFLTWLEAIEQGEGDEEVRDE
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcgtgacgatgacacggcccgcgaagctgcccggctacgccgcgagctggaa
gaggccaattaccattactatgtcgaagatgcgcccgttattcccgatgccgagtttgat
cgcatgctgcgtcggcttcaggagatcgaggccgagcatcctgatctggtaacggtcgat
tcgccgactcggcgtgtcggcgcgccaccttccgagggtttcccggaagtgcgccatgcg
atcgccatgctgtcactggataatgccttcaatcatgatgaggtgcgcgcttttgcccga
cgggtggccgatcggctcgagcgtgatccggaaacgatcgatttctgctgtgaacccaag
ctcgacggcctggcagtgtcactcgtctatgaacagggtgtgctggtacagggcgcgacg
cgaggcgatggccgcacgggggaaggcatcacggccaatctgcggacactgaaatcgatt
ccgctacgcctgcgtggcgaacatccgcccgagttgctggaagttcgtggtgaggtctac
atgtcgcattcgggtttcgagcggctcaatgagcaggctcgcgaaaccggcggcaaggtg
ttcgccaacccgcgcaatgcagcagctggaagcgtgcgtcagcttgatccgcagatcgct
gcctcaaggccgctggaattctgtgcctatcaggtagcgcggatcgatgaggcgcgctgg
gagagcctgcactcggcacagatgcacggtctgcgtcagctgggctttcgtaccagtccg
gccctggaggtggtcaccggtgccgaaggcctgatcgatttctgtcagcgtttgggcgaa
aagcgcgagacgcttgattacgacatcgatggcgctgtcatgaaggtcgacgactaccgt
tggcagcgtgaactgggctatgtctcccgcgcgccgcgctgggcgatggcgttcaagttt
cccgcccaggagcagaccaccaccatcaacgatgtgcgttttcaggtgggacgaaccggt
cgattgacgccggtggccgaactcgagccggtgcaggtagccggtgttacggtcgccaac
gcctcattgcacaacatggatgagattgcccgtcttgatgcgcgcattggcgataccgtg
attgtgcgtcgtgccggcgatgtcattcctcaggtggttcaggtcattgttgaaaaacgc
ccacagcagacccgggcgatcgaaatgcccgccgagtgtccggtctgtggctcacgggtt
gatcgtgcggagggtgaagtcgatgccatttgcagcggtggactcttctgtccggcgcag
cgcaaggagtcgctcaagcactttgccagtcgtcgtgcgctcgatatcgacggtctgggt
gacaagctgatcgaccagctggtggagctggagtgggtcaaaacaccggccgatctgttc
cggcttgaggtggcgcgcctgagcgaactgccacgggtagcggagaagtctgcgaccaat
ctggtcaatgccattgatcgatcccgtcagacgacgctgacacgctttatcttcgcgctg
ggcattcctgaagtgggagaagccacggcgggcgcgctggcggctcatttcggtacgctc
gaacgtctgatggccgctgatgaaacagcattgaccgccgtgtcggatatcggtcccatc
gtcgcgtcgcatatccacgccttcttcgccgagcaacacaatcgcgacattatcgacgat
ctgcgccggatgggcgtgacctgggaggaagtcgagatcattgatcggccgcagccgctg
gcgggccagacctgggtattgaccggtacgctcgaagcgatgactcgggatgaggcgaag
gcgcgactgacggcgctgggagcaaaggtcagcggtagtgtctcgaagaagacgcacgcc
gtggtggcaggtccgggtgcaggcagcaagctggagcgggctcatgaactcgaactgacg
gtttacgatgaaactgaatttctgacctggctcgaggcgatcgagcagggcgagggagac
gaggaggtgcgtgatgagtga
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