Klebsiella variicola DX120E: KR75_07590
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Entry
KR75_07590 CDS
T03531
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kvd
Klebsiella variicola DX120E
Pathway
kvd03030
DNA replication
kvd03410
Base excision repair
kvd03420
Nucleotide excision repair
kvd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kvd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KR75_07590
03410 Base excision repair
KR75_07590
03420 Nucleotide excision repair
KR75_07590
03430 Mismatch repair
KR75_07590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kvd03032
]
KR75_07590
03400 DNA repair and recombination proteins [BR:
kvd03400
]
KR75_07590
Enzymes [BR:
kvd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KR75_07590
DNA replication proteins [BR:
kvd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KR75_07590
DNA repair and recombination proteins [BR:
kvd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KR75_07590
NER (nucleotide excision repair)
GGR (global genome repair) factors
KR75_07590
MMR (mismatch excision repair)
DNA ligase
KR75_07590
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KR75_07590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
HHH
HHH_5
DUF3701
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AJA94707
LinkDB
All DBs
Position
109121..110797
Genome browser
AA seq
558 aa
AA seq
DB search
MRKGGWWLALGMFSASALATCPDWPPARGRQEISRLHQQIVAWKEDYWRQGASEVSDEVY
DQLTLRLAQWRQCFPGTTPEDDDLPPPTGDARHPVAHTGVRKLADEISVAHWMKNKTDLW
IQPKVDGVAVTLVYRQGSLVQAISRGDGLRGEAWTARARQIPALAKVTTGELANSVLQGE
LFLRRDGHVQQQAGGMNARAKVAGLMMRADAAAALSQLDVFIWAWPDGPSDMRRRQQLLT
QAGFKYSGQYTHPVTRVEQVAQWRQRWYRSPLPFVSDGVIVREGREPPGRAWSPGKGEWL
AAWKYPPASQVMEVRAIHFSTGRSGRLNVVAQLEPQRLDDKRVQRVNIGSVARWQALDIG
VGDQLQISLAGQGIPRIDAVVWRTAERHKPTPPAAKFNALTCYFATPECSEQFLSRLIWL
SSKSALDVDGVGENLWRAIQQQNPMTHIFSWLALTVEQLQAVPGISAARGQHLWHQFDLV
RKRPFIRWVLAMGLPVPQGALTQLESENWHLLAAKSEAQWRALPGVGEIRARQLVAFLHH
PDVVALAQWLSGQRIPGF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaggagggtggtggctggcgctagggatgttctctgccagcgcgctggcgacg
tgtccggactggccgccggccagaggaaggcaggagatttcacgccttcatcagcaaatt
gtcgcctggaaagaggactactggcgacaaggcgccagcgaagtgagcgatgaggtttac
gaccagctcaccctgcgcctggcgcagtggcgacaatgctttccgggcacgacgcctgaa
gatgacgatctgcctccgcccaccggcgatgcgcgtcatccggtggcccataccggcgtg
cgcaagctggcggatgagatcagcgtggcccactggatgaaaaataaaaccgacctgtgg
atacagcctaaagtggacggcgtggcggtgaccctggtctatcgccaggggagtttggtt
caggccattagccgcggcgatggtctgcgcggtgaggcatggaccgcccgagcgcggcag
atcccggcgctggcgaaagtgacgaccggtgaactggccaacagcgtgctgcagggggag
ctgtttctgcgccgggacggccatgttcagcagcaggctggggggatgaacgcgcgggcg
aaagtcgccgggttgatgatgcgagccgacgcggcggcggcgctcagtcaactggacgtt
tttatctgggcctggccagacggcccgtcggatatgcgccgtcgacagcagctgctgacg
caggcggggtttaagtacagcgggcaatatacccacccggtgacacgcgtcgaacaggtg
gcgcagtggcgccagcgctggtatcgctcgccgcttcccttcgtcagcgatggcgtgatt
gtgcgcgaagggcgcgaaccgccgggacgtgcctggtctcccggaaagggagagtggctg
gcggcctggaagtatcctccggcctcgcaagtgatggaggtacgggcgatccatttcagc
actggccgcagcggcaggctcaacgtcgtggcccagcttgagccccagcggctggatgat
aaacgcgtgcagcgggttaatattggctctgtggcccgctggcaggcgctggatattggg
gttggcgatcagctgcagatcagtctggcagggcaggggattcctcggatcgacgccgtc
gtctggcggacggccgagcgccataaaccgacgccgccggcggcgaaattcaatgcgcta
acctgctatttcgccacccctgagtgcagcgaacagtttctttcccggctgatctggctg
tcatcaaagtccgcgctggatgtcgatggcgtgggggaaaatttatggcgcgccattcag
cagcaaaacccgatgacgcatattttttcctggctggcgcttacggtggagcagctgcag
gcggtgccagggatctccgccgcccgcgggcagcacctctggcatcaatttgatctcgtt
cgcaaacggccttttatccgctgggtgctggcgatggggctcccggtgcctcagggggcg
ctgacgcagctcgaaagcgagaactggcatctgctggcggcaaaaagtgaagcgcaatgg
cgcgcgctgccgggcgtgggggagatcagagcccgccagctggtggccttcctgcaccat
ccggatgtggtggcgctggcgcaatggctcagtgggcagcgcatccccggattttga
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