Klebsiella variicola DSM 15968: SP68_07870
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Entry
SP68_07870 CDS
T03641
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kvq
Klebsiella variicola DSM 15968
Pathway
kvq03030
DNA replication
kvq03410
Base excision repair
kvq03420
Nucleotide excision repair
kvq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kvq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SP68_07870 (ligA)
03410 Base excision repair
SP68_07870 (ligA)
03420 Nucleotide excision repair
SP68_07870 (ligA)
03430 Mismatch repair
SP68_07870 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kvq03032
]
SP68_07870 (ligA)
03400 DNA repair and recombination proteins [BR:
kvq03400
]
SP68_07870 (ligA)
Enzymes [BR:
kvq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SP68_07870 (ligA)
DNA replication proteins [BR:
kvq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SP68_07870 (ligA)
DNA repair and recombination proteins [BR:
kvq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SP68_07870 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SP68_07870 (ligA)
MMR (mismatch excision repair)
DNA ligase
SP68_07870 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SP68_07870 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Prok-E2_C
DZR_2
DUF2229
Motif
Other DBs
NCBI-ProteinID:
AJE89167
UniProt:
A0A0B7GGP1
LinkDB
All DBs
Position
1431957..1433972
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELESQHPELITPDSPTQ
RVGAAPLTAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDDLTYCCELKLDGLA
VSILYENGVLMQAATRGDGTTGEDITSNVRTIRTIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPASHS
ARLQQFKAWGLPVSDRVTLCHTPEEVLTYYRKVEEDRPHLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLKIGDKVVIRRAGDVIPQVVNVVLSERPADARDVVFPTHCPVCQSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFRLSAG
KLTGLDRMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAALAAHFGTLEALEQ
ASIEELQKVPDVGIVVATHTFNFFAEESNRDVIAQLLAEGVHWPAPVVVKAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgatcgaacaacaactgactgaactgcgaaccacgcttcgccatcatgaatat
ctgtaccacgttatggacgcaccggaagtgcccgatgcggaatatgaccgcctgatgcgc
gagctgcgcgagctggagagtcaacatccggagctgattaccccggactcgccgactcag
cgggtgggggcggcgccactaactgccttcagccagatccgccatgaagtgccgatgctg
tcgctggataacgtgtttgatgaagagagctttctcgccttcaacaagcgggtacaggat
cgcctgaaaagcactgacgatctcacctactgctgcgagcttaagctcgacggcctcgcg
gtgagtattctctacgaaaacggcgtactgatgcaggccgcgacccgcggcgacggtacc
accggcgaggatattacctccaatgtgcgaaccattcgcactatccccctcaagctgcat
ggcgagaatatcccggcacgtcttgaggtgcgtggtgaggttttccttccgcaggccggg
tttgaaaaaatcaatgaagaagcgcgccgcaccggcggaaaagtgtttgctaacccgcgt
aatgcggcggcgggttcgctgcgccagctcgatccgcgcatcacggcgaagcgaccgctt
actttcttctgctacggcgttggcgtgctggagggcggtgagctgccggccagccactcg
gcccgtttgcagcagttcaaagcatggggactgccggtgagcgatcgcgtcaccctgtgt
catactcccgaggaagtgctcacttactatcgtaaagtcgaggaagatcgtcctcatctg
ggctttgacattgatggcgtggtgatcaaagtcgattcgctggcgctgcaggagcagttg
ggttttgtggcccgcgcgccgcgctgggccgtggcctttaagttcccggcacaggagcag
atgactttcgtccgggatgtggagttccaggtagggcgcaccggggcgatcacgccagtg
gcgcgcctggagccggtccatgtcgccggcgtgctggtgagcaatgccaccctacataac
gccgatgaaatcgaacgcttaggtctgaaaatcggcgacaaggtagtgattcgtcgggca
ggcgatgtgatcccgcaggtggtcaatgtggtgctttccgagcgtccggcggatgcccgg
gatgttgtcttcccgacccactgcccggtatgtcagtccgacgttgagcgagtggagggc
gaggcggtagcccgctgtacaggcggccttatctgcggcgcgcagcgtaaagagtcgctt
aagcacttcgtctcccgtcgcgcgctcgacgttgacggcatgggtgacaagatcatcgac
caactggtggagaaagagtatgtccatacgccggcggatctgttccgcctgagcgccggg
aaactcaccgggctggatcggatggggccgaagtccgcgcaaaatgtggtcaatgctttg
gaaaaagccaaagagacgaccttcgcacgcttcctctacgctctgggtattcgcgaggta
ggcgaagcgacagcggcggccctggcggcgcatttcggcactcttgaagccctggagcag
gcttccattgaggagctgcaaaaggtccctgatgttggcatcgtggttgccacccatacc
ttcaacttctttgccgaagagagtaaccgcgatgtcatcgcgcagctgctggccgaaggc
gttcactggccggcgccagtcgtggtgaaggcggaagagattgatagcccgtttgcgggt
aaaaccgtggtcctgaccggcagcctgagtcagctatcgcgggatgacgccaaagcgcgt
ctcgtcgcgctgggggcgaaggtggcaggcagtgtgtcgaagaaaactgacctggtgatt
gccggcgaagcggcgggttctaagctggcgaaagcgcaggagctgggcattgaggtgatt
gacgaagccgaaatgatgcgtctgctgggagaataa
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