Kocuria varians: CIB50_0000237
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Entry
CIB50_0000237 CDS
T06882
Symbol
pdg
Name
(GenBank) Ultraviolet N-glycosylase/AP lyase
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
kvr
Kocuria varians
Pathway
kvr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
kvr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CIB50_0000237 (pdg)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kvr03400
]
CIB50_0000237 (pdg)
Enzymes [BR:
kvr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CIB50_0000237 (pdg)
DNA repair and recombination proteins [BR:
kvr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CIB50_0000237 (pdg)
Prokaryotic type
CIB50_0000237 (pdg)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QMS55552
UniProt:
A0A7D7PRR7
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All DBs
Position
complement(258598..259473)
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AA seq
291 aa
AA seq
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MIEGMDTPAAAAHVRFVTPRQAEQAAARRRRAGTETDLSRTRRARRIQRVLAQTYPYAVA
ELDFDDAWQLLVATVLSAQTTDIRVNAVTPGLFAAYPGPRELAEAPAEDVQEMVRSLGFY
RSKARSIQALATRIVDEYDAAVPGTVEDLVSLPGVGRKTANVVLGNAFGVPGITVDTHFG
RLARRFGWTENEDPVKVEKDVAALFPSALWTELSHELIYHGRRICHSRKPACGVCPVADL
CPSYGAGPTDPEAARKLLGYELKPGREDLLAGFMAGRTRRQLRAEGHTLSA
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagggcatggacacccccgccgcagcagcccacgtgcgcttcgtgacgccgcgg
caggcggagcaggcggccgcgcggcgtcgtcgtgccgggaccgagacagacctgtccagg
acgcggcgtgcgcggcggatccagcgcgtgctcgcgcagacctacccctacgccgtcgct
gagctcgacttcgacgacgcctggcagctgctcgtggccaccgtcctgtccgcgcagacc
accgacatccgcgtcaacgccgtgacgcccgggctgttcgccgcatatcccggcccgcgg
gaactggccgaggcgccggccgaggacgtgcaggagatggtgcgctcgctcggcttctac
cgctcgaaggcgcgctcgatccaggcgctggccacgcgcatcgtggacgagtacgacgcc
gccgtccccggcacggtcgaggacctcgtgagcctgcccggcgtggggcgcaagaccgcg
aacgtggtgctcggcaacgcgttcggggtcccggggatcacggtggacacccacttcggg
cggctcgcccgccgcttcggatggaccgagaacgaggacccggtcaaggtcgagaaggac
gtggccgcgctgttcccgtccgccctgtggaccgagctgtcccacgagctgatctaccac
gggcggcggatctgccactcccgcaaacccgcgtgcggcgtgtgccccgtggcggacctg
tgcccgtcctacggcgccgggcccacggatcccgaggcggcgcggaagctgctcggctac
gaactgaaacccggccgcgaggacctgctggccgggttcatggcgggacgcacccggcgg
cagctgcgcgccgagggacacacgctcagcgcgtga
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