Kyrpidia spormannii: CVV65_14120
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Entry
CVV65_14120 CDS
T05215
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kyr
Kyrpidia spormannii
Pathway
kyr03030
DNA replication
kyr03410
Base excision repair
kyr03420
Nucleotide excision repair
kyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CVV65_14120 (ligA)
03410 Base excision repair
CVV65_14120 (ligA)
03420 Nucleotide excision repair
CVV65_14120 (ligA)
03430 Mismatch repair
CVV65_14120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kyr03032
]
CVV65_14120 (ligA)
03400 DNA repair and recombination proteins [BR:
kyr03400
]
CVV65_14120 (ligA)
Enzymes [BR:
kyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CVV65_14120 (ligA)
DNA replication proteins [BR:
kyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CVV65_14120 (ligA)
DNA repair and recombination proteins [BR:
kyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CVV65_14120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CVV65_14120 (ligA)
MMR (mismatch excision repair)
DNA ligase
CVV65_14120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CVV65_14120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_NUD
HHH_8
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ATY85916
UniProt:
A0A2K8N985
LinkDB
All DBs
Position
complement(2864521..2866554)
Genome browser
AA seq
677 aa
AA seq
DB search
MSGQGDAARRIEELRALIRRYDYHYYVLDDPLVDDAEYDRCMRELVELEARHPELVTPDS
PTQRVSGAPSEAFAKVVHREPMLSLANAFSEGDVRDFDRRVRAALPGEDVEYVCELKIDG
LAISLRYENGEFVQGATRGDGELGEDITRNLRTIRVLPLRLPERVSVEVRGEAYMPKKVF
LRVNRERDEAGEPAFANPRNAAAGSLRQLDPRVTARRGLSLWMYAAVLGPDGTVPGGPGP
FRTHEEILEWLDTLGFPVNPHRRVCRNLEEVFQFLNEGDQLRATLPYDIDGMVIKVNNLD
QQNRLGATAKSPRWAMAYKFAPEQAETRLLTIEVSVGRTGVVTPTAVFDPVFLAGTTVSR
ASLHNEDLIRERDIRIGDIVVVEKAGEIIPEVVRVRADLRTGEEHIFSMPKDCPACGSPL
VRLEEEVALRCVNPDCPAQIQEGIIHFASRDAMNIEGLGEALVAQLYREGLIHSVADLYE
LKREQLVPLERMGAKSADNLLQAIERSKQNSLERLLFGLGIRYIGEKASRVLAAHFKDMD
ALMEAPSEELLKVPDIGTKMAQSIRVYFGQESARRLIERLRTHGVNMVYRGAEAAPVPSR
LAGKTVVLTGTLHAMGRREAQDWVRRLGGKPTESVSRKTDIVIAGEDPGSKLDKARQLGI
EVMNEDQFLSILREAGF
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggccagggggatgcagcccgccggatcgaagagttgcgggcgctgattcgacgt
tatgattatcactactatgtgctggacgatccgctggtggacgacgccgagtacgatcgc
tgcatgcgggaattggtggagttggaggctcggcacccggagctcgtgaccccggactcc
cccacccagcgggtctccggggcgccgtccgaggcttttgccaaggtcgtccaccgggag
ccgatgctttctttggcgaatgcgttcagcgaaggggatgtgcgggatttcgaccgccgg
gttcgggcggcgctgcccggcgaggacgtggagtacgtctgtgagctgaagattgacggg
ctggccatttccctgcgctacgaaaatggcgagtttgtgcagggggcgacccggggggac
ggcgaactgggcgaggatatcacccggaatctgcgcaccatccgggttttgcctttgcgc
ctcccggagcgggtcagtgtggaggtgcggggcgaggcttacatgccgaaaaaggtcttc
ctgcgggtcaaccgggaacgggacgaggccggggaaccggcttttgcgaacccccgcaat
gccgccgccgggtccctgcgccagctcgatccgcgggtgacggcccgccgggggttgtcc
ctgtggatgtacgccgcggtcttggggcccgacgggactgtgcctggaggaccgggaccc
tttcgcacccacgaggagatcctagaatggctagataccctcggatttccggtgaacccc
caccggcgggtttgtcggaacctggaggaagtgtttcaattcttaaacgagggggaccag
ctccgggcaacgttgccttatgacattgatgggatggtcattaaggtcaataacctcgat
caacaaaaccggctgggcgcgacggcgaaaagtccccgatgggcgatggcttataaattc
gccccggaacaggcggagacgcggttgttgacaatcgaggtgagcgtgggccgtaccggt
gtggtgacccccaccgccgtttttgaccccgtttttttggccggtaccacggtgagccgg
gcgagtttacataatgaggatttgatccgggaacgagatatccgcatcggcgacatcgtg
gtggtggaaaaggcgggggagattatccccgaagtggtgcgggtgcgggccgatctccga
accggagaagagcatattttctccatgcccaaggattgcccggcctgcgggtcccccttg
gtgcgcttggaagaagaagtggccctgcggtgcgtgaacccggactgtcctgcccagatt
caggaagggatcatccattttgcctcccgggatgcgatgaatatcgagggcttgggggaa
gcgctggtggcccagctgtacagagaggggttgattcatagcgtcgccgacctctatgaa
ctgaagagagagcagttggtgcccctggagcgcatgggggccaaatctgcagataatctg
ttgcaggcgattgagcgaagcaagcagaattctctagagcggcttttgtttggcctcggg
atccggtatatcggcgaaaaggcatcccgggtgttggcggcacactttaaggacatggac
gcgctgatggaggcgccttcggaagagctgctcaaggtgccggatattgggacgaagatg
gcccagagtattcgggtatactttggtcaggaatcggcgcgccgattgatcgagcgcctt
cggacccacggtgtgaacatggtgtatcgcggggccgaggcggcgccggtgccttcccgg
ctggcggggaagacggtggtgttgaccgggacccttcatgccatggggcgccgggaggcc
caggattgggtgaggaggctcggcgggaagcccaccgagagcgtcagccggaagacggac
atcgtgatcgccggggaagaccccggctccaagctcgacaaagcccggcagctgggcatc
gaagtgatgaacgaagatcagtttttgtccattcttcgtgaagccggattttga
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