Kurthia zopfii: NCTC404_01273
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Entry
NCTC404_01273 CDS
T05934
Symbol
ligA_1
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kzo
Kurthia zopfii
Pathway
kzo03030
DNA replication
kzo03410
Base excision repair
kzo03420
Nucleotide excision repair
kzo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kzo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC404_01273 (ligA_1)
03410 Base excision repair
NCTC404_01273 (ligA_1)
03420 Nucleotide excision repair
NCTC404_01273 (ligA_1)
03430 Mismatch repair
NCTC404_01273 (ligA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kzo03032
]
NCTC404_01273 (ligA_1)
03400 DNA repair and recombination proteins [BR:
kzo03400
]
NCTC404_01273 (ligA_1)
Enzymes [BR:
kzo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC404_01273 (ligA_1)
DNA replication proteins [BR:
kzo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC404_01273 (ligA_1)
DNA repair and recombination proteins [BR:
kzo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC404_01273 (ligA_1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC404_01273 (ligA_1)
MMR (mismatch excision repair)
DNA ligase
NCTC404_01273 (ligA_1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC404_01273 (ligA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
AphA_like
5_3_exonuc
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
VEI05847
LinkDB
All DBs
Position
1:1255946..1257952
Genome browser
AA seq
668 aa
AA seq
DB search
MDQLQLEEKVAEYNKLLKEYGHAYYVLDQPVVSDAIYDQMLHELIAIEEQHPDLIYPDSP
TQRVGGEILKGFQKIEHRYPMLSLGNAFNEADLQAFDDRIRNMIGDKFSYVCELKIDGLA
ISLIYENGLFKTGATRGDGTTGEDITENLKTVHSIPLRLAEPISIEARGECYMPKKSFTD
LNKARAERGEELFANPRNAAAGSLRQLDPKIAASRNLATFIYAVGGSGESYGLSSHSEAL
AYMDKLGFQTNHERQNCKTIKEVWAYIERWTEERPNLSYEIDGIVIKVDRYDQQQELGST
VKAPRWSIAYKFPAEEVVTKVLDVDLTVGRTGVVTPTAILEPVQVAGTTVQRATLHNEDI
IREKDIRIGDAVIIRKAGDIIPEVKQVLFDQRPEGLEPFEMPTHCPACDSELIRLEGEVA
LRCRNPKCFAQIAEGMSHFVSRNAMNIDGLGERVVEQLLREKLVEDISDLYTLEFEKLIQ
LERMGEKSAQNLLDAIEASKTNSLERLLFGLGIRHVGAKAAKILAEEFESMDALMEASKE
QLVTIFEIGDKMAESVITYFENEEVRELIERLRHLNVNLYYTGKKVNTESIESVFNGKVI
VLTGKLSQLTRTEAQEKIEALGGKVTGSVSKKTDLVVAGEDAGSKLTKAEQLGIEVWNEI
RLVEELAK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacttcaattagaagaaaaagtagcagaatacaataaattattaaaagaatat
ggtcatgcctattacgttttggatcaaccagtcgtatcggatgcaatttatgaccaaatg
cttcatgagttaatcgcaattgaagaacaacatccagatttgatttatccagattcacca
acgcaaagagtgggcggagagattttaaaaggattccaaaaaatcgaacaccgctacccg
atgcttagtcttggaaatgcttttaatgaagcggatttacaagcttttgatgatcgaatc
cgtaatatgattggcgacaaatttagctatgtatgtgaattgaaaattgatggattagcg
atttcgttaatttatgaaaatggtttattcaaaacgggcgcaacgcgtggtgatggtacg
acgggtgaggatattacggagaacttgaaaaccgtacattctatcccacttcgtttagca
gaacctatttcgattgaagcacgtggcgaatgttatatgccgaaaaaatcatttactgat
ttgaataaagcgcgagcagagcgtggggaagaattatttgcgaaccctcgtaatgcggct
gcaggttcactgcgccaactcgatccgaaaattgcggcgagtagaaatttagctactttc
atttatgcggtaggtggaagcggcgaatcttatggactatcaagtcatagtgaagcatta
gcttatatggacaagctcggattccaaacgaatcatgaacgtcaaaactgtaaaacgatt
aaagaagtatgggcttatatcgaaagatggacagaagaaagaccgaatctgtcatatgaa
attgatggtatcgtcattaaagtcgatcgctatgatcaacagcaggaattaggcagtaca
gtgaaagcaccacgttggtcaatcgcgtataaattcccagctgaagaagtagtgacgaaa
gttttagatgtggatttaactgtaggacgaactggtgtcgtaacaccaactgcgatttta
gaaccggtgcaagttgctggaacgaccgtacaacgtgctactttgcataatgaagacata
atccgagagaaagatattcgaattggtgatgcggtcattattcgaaaagcaggcgatatt
attccagaagtgaagcaagtgttgtttgatcaaagacctgaaggattagagccgtttgaa
atgcctacgcactgcccagcttgtgatagcgaattaatacgacttgaaggtgaagtcgct
ttaagatgtcgcaatccgaaatgcttcgctcaaatcgcggaaggtatgtcacatttcgta
tctcgtaatgcgatgaatatcgatggattaggtgagcgagttgttgagcagttacttcgt
gaaaaattagtggaggatatttctgacttatacactttagaatttgaaaagctgattcag
ttggagcgtatgggcgagaagtctgcacaaaatttattagatgcgattgaagcttcaaaa
acgaattcattggaaagactactgtttggactaggcattcgtcatgtaggcgcgaaagca
gcgaaaatacttgcagaagagttcgaatcgatggacgctttaatggaagcatcaaaagag
caacttgtgacaatctttgaaattggtgacaagatggccgagtcggtgattacttatttt
gaaaacgaagaagttcgagaattaatcgaacgtttacgtcacttgaacgtcaatttatat
tatactggtaagaaagtaaatacagagagcattgaaagtgtcttcaacggcaaagtaatc
gtgctaaccggtaagctttcacaacttacacgcactgaagcgcaagagaaaattgaagcg
ctaggtggtaaagttacaggaagtgttagtaagaagacggatttagttgtagcaggtgag
gatgcaggttcgaagcttacaaaagcagaacagctcggtattgaagtatggaatgaaata
cgccttgtagaagaattagcaaagtaa
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