Labrenzia sp. PHM005: FJ695_12650
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Entry
FJ695_12650 CDS
T06152
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
labp
Labrenzia sp. PHM005
Pathway
labp03030
DNA replication
labp03410
Base excision repair
labp03420
Nucleotide excision repair
labp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
labp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FJ695_12650 (ligA)
03410 Base excision repair
FJ695_12650 (ligA)
03420 Nucleotide excision repair
FJ695_12650 (ligA)
03430 Mismatch repair
FJ695_12650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
labp03032
]
FJ695_12650 (ligA)
03400 DNA repair and recombination proteins [BR:
labp03400
]
FJ695_12650 (ligA)
Enzymes [BR:
labp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FJ695_12650 (ligA)
DNA replication proteins [BR:
labp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FJ695_12650 (ligA)
DNA repair and recombination proteins [BR:
labp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FJ695_12650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FJ695_12650 (ligA)
MMR (mismatch excision repair)
DNA ligase
FJ695_12650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FJ695_12650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
QDG79597
UniProt:
A0A4Y6S541
LinkDB
All DBs
Position
2818675..2820846
Genome browser
AA seq
723 aa
AA seq
DB search
MSNQNPESRPSSEISVAELSPETAKAELERLAAEIADHDRRYHQEDAPSISDAEYDALRR
RNLEIETRYPDLVLSEGPSAQVGAAPASGFGKIAHRVPMLSLDNAFNDDDVRDFVGRVRR
FLKFDPLMGALAVTAEPKIDGLSLSLRYEGGKLVYAATRGDGATGENVTANAKTIKDIPH
TLQGTVPDVIEVRGEVYMAHQDFQALNARMEANGGKVFANPRNAAAGSLRQLKSEITASR
PLKFFAYAWGEMSELPKDTQNGMVALLADWGFQINPLMKRCETVEDLLAVYHGIEESRAQ
LDYDIDGVVYKVDRLDLQERLGFVSRSPRWAIAHKFPAEQAWTVLNDIEIQVGRTGALTP
VAKLEPITVGGVVVSNATLHNEDYIKGIGQDGEPIRGGKDLRPGDTVKIQRAGDVIPQIV
DVDLDKRSADAEAYAFPVRCPICNSHAVREENEKTGRKDAIRRCTGGLICPAQATEKLKH
FVSRNAFDIEGFGDKQVDAFYQDDLVKVPAEIFTLEARDKQSLTKLRNREGWGAVSAKNL
FEAINARREIDLNRFIFALGIRHVGEGNAKLLARAYGSWETFAAAMEAAGEQTGEAWTDL
NDIDGIGHIVAEALVEFFAESHNREQLAALLEEVTPKDAENIEASGSPVAGKTVVFTGSL
ERMTRDEAKAMAERFGAKVSGSVSKKTDLVVAGPGAGSKLKKAQDLNVDVISEDGWFDLV
GAN
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatcaaaaccctgagagtcgcccgtcctcagagatctccgtagctgaactgtcg
ccagagaccgccaaagcagaactggagcggctggcagccgaaattgcggaccatgaccgg
cgctatcaccaggaagatgcgccgtcgatttcggacgcagagtatgacgccctgcgccgc
cggaacttagagattgaaacgcggtacccggatctagttctgtctgaggggccgtctgcg
caagtcggtgctgcgccagcttccggatttggcaagatcgctcaccgcgtgccgatgttg
tcgctggacaatgctttcaacgatgacgatgtgcgtgattttgtcggccgggtgcgccgc
tttctgaaattcgatccactcatgggtgcattggccgtcactgctgagccgaaaatcgac
ggattgtccctatcgctgcgctatgagggcggcaagctcgtttatgccgccacgcgcggc
gatggtgcgacaggtgaaaacgtcaccgccaacgcaaaaacaatcaaggatatcccgcac
acccttcaaggcacggttccggacgtcattgaggtccgcggtgaggtctatatggcccac
caggactttcaggcgctcaacgcgcgtatggaggccaatggcggcaaggtgtttgccaat
ccgcgcaatgcggccgccggctcgcttcgtcagctcaagtctgagatcaccgcgtcccgg
cctctgaagttttttgcctatgcctggggggaaatgagtgagcttcccaaggacacccag
aacggcatggttgcgctgcttgccgactggggatttcagatcaatccgctgatgaaacgc
tgcgagacggtcgaagacttgcttgccgtctatcacggcattgaggaaagccgggcgcag
ctcgactatgacatcgatggggtcgtctacaaggttgataggctggacctgcaggagcgt
ctcgggttcgtctcgcgctcgccccgttgggcgattgcgcataagtttcctgctgagcaa
gcctggactgttctcaacgacattgaaatccaggtcggccgcaccggcgcgctgacgccg
gtcgccaagttggagccgatcacggtcggcggggtcgtggtctctaacgcgacactgcac
aacgaggactacatcaagggtattggtcaggacggcgagccgatccggggcggcaaggac
ctgcgcccaggcgatacggtcaagatccagcgggccggggacgttattccgcagattgtc
gatgttgatctcgacaaacggtctgcggatgcggaagcctatgcgtttccggtccgctgc
ccgatctgcaacagccatgctgtgcgcgaagagaacgaaaagacgggccgcaaggatgcc
atacgccgctgtaccggcggcctgatttgcccggcgcaggcaaccgagaagctgaaacac
tttgtctcgcgcaatgccttcgacatcgaaggctttggcgacaagcaggttgatgcattt
tatcaagatgacttggtcaaggtgcctgcagagatcttcacgcttgaagcgcgggacaaa
cagtccctgaccaaactgcgcaaccgggaaggctggggcgcggtttcggccaaaaacctg
tttgaagcgatcaatgcccggcgggagattgacctcaaccgctttatcttcgctctcggc
atccgtcatgtgggggagggcaatgccaaactgctggcacgcgcctatggctcttgggag
accttcgcggcggctatggaagcagctggcgaacaaactggagaggcttggacggatctc
aatgacattgacggcatcggccatatcgttgctgaggcgttggtcgagttctttgccgaa
agccacaatcgggaacagcttgcagcgcttctggaagaggtcactccaaaggacgccgaa
aacattgaggcctccggatcgccggtggctggcaagactgtcgtcttcactggttcacta
gaacgtatgacccgggatgaggccaaggccatggccgaacggtttggtgccaaagtttct
ggatccgtgtcgaaaaaaacggatctggtcgtggctggtccgggggccgggtcgaaactg
aaaaaggcccaagatctaaacgtcgatgtcatttcagaagatggctggttcgatctggtt
ggggccaactag
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