KEGG   Labrenzia sp. VG12: CHH27_11345
Entry
CHH27_11345       CDS       T04984                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
labr  Labrenzia sp. VG12
Pathway
labr03030  DNA replication
labr03410  Base excision repair
labr03420  Nucleotide excision repair
labr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:labr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CHH27_11345
   03410 Base excision repair
    CHH27_11345
   03420 Nucleotide excision repair
    CHH27_11345
   03430 Mismatch repair
    CHH27_11345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:labr03032]
    CHH27_11345
   03400 DNA repair and recombination proteins [BR:labr03400]
    CHH27_11345
Enzymes [BR:labr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CHH27_11345
DNA replication proteins [BR:labr03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CHH27_11345
DNA repair and recombination proteins [BR:labr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CHH27_11345
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CHH27_11345
   MMR (mismatch excision repair)
    DNA ligase
     CHH27_11345
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CHH27_11345
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT Nlig-Ia CSL4_N
Other DBs
NCBI-ProteinID: ASP33765
UniProt: A0A222F3B9
LinkDB
Position
complement(2425157..2427313)
AA seq 718 aa
MSDNSTTSGKDVGILSEAEAKAELQRLAAEIAEHDRRYHQEDAPIISDADYDALRRRNKE
IEARFPDLVLADGPSANVGAAPASGFGKITHRVPMLSLDNAFSDEDVQDFVGRVRRFLKF
DPLQGVLAVTAEPKIDGLSLSLRYENGQLVYAATRGDGTTGENVTANARTIKDIPETLSG
NVPEVVELRGEVYMAHKDFQALNARMEANGGKVFANPRNAAAGSLRQLKSEITASRPLRF
FAYAWGEMSAMPAGTQFDMVEQMRAWGFQINPLMKRCETVEELLGVYHGIEESRAQLDYD
IDGVVYKVDRLDLQERLGFVSRSPRWAIAHKFPAEQAFTVLNDIEIQVGRTGALTPVAKL
EPITVGGVVVSNATLHNEDYIKGIGQDGEPIREGKDLRIGDTVKIQRAGDVIPQIVDIDL
DKRSEGAQPFEFPTVCPACGSHAVREENEKTGRVDAVRRCTGGLICPAQATEKLKHFVSR
NAFDIEGFGDKQVDAFYQDGMVMAPADIFTLEERDKRSLTKLRNREGWGAVSARNLFEAI
NARRDIDLHRFIFALGIRHVGEGNAKLLARAYGSWAAFYQAMQAAHDPAGEAFAELNDID
GIGHIVADALVEFFAEQHNRAQLDALLAEVSPKDPEKIDASGSPVAGKTVVFTGSLERMT
RDEAKAMAERFGAKTSGSVSKKTDLVVAGPGAGSKLKKAQELDIEVISEDDWFELVGA
NT seq 2157 nt   +upstreamnt  +downstreamnt
atgagcgacaacagcaccacgtccggcaaggacgtcggcatcttgagcgaagcggaagcc
aaggcagagttacagcgtctggcggctgaaatcgccgaacacgaccggcgctaccaccag
gaagatgccccgatcatctccgatgccgactacgacgccctgcgccgtcgcaacaaagag
attgaggcgcggtttcccgatctggtcctggccgatgggccgtccgcgaatgtcggcgca
gcgccggcgtccggtttcggcaagatcacccaccgggtgccgatgctgtctctggacaat
gccttcagcgacgaagacgtccaggactttgtcggccgggtgcgccgcttcctgaaattc
gatccgctccagggcgttctggcggtaaccgcagagccgaagatcgacggcctgtccctg
tccctgcgctatgaaaacggtcagctcgtttatgccgccacgcgtggcgacggcaccaca
ggtgaaaacgtcaccgccaacgcccggaccatcaaggacatcccggaaacgctgtccggc
aacgtgcctgaggtcgtcgagctgcgcggtgaagtctacatggcgcacaaggacttccag
gcgctcaacgcccgcatggaggccaatggcggcaaggtctttgccaatccgcgcaatgcg
gcggcgggctccctgcgtcagctgaaatcggaaatcaccgcctcaagacccctgcgtttc
tttgcctatgcctggggcgagatgagcgccatgcccgccggcacccagttcgacatggtc
gagcagatgcgggcctgggggtttcagatcaacccgctgatgaaacgctgcgagacggtt
gaggagctgcttggtgtctatcacggcatcgaggaaagccgcgcgcagctcgattacgac
attgacggtgttgtctacaaggtcgaccggctggacctgcaggaacggctcggcttcgtg
tcccgttcacctcgctgggcgattgcgcacaagttcccggccgagcaggccttcaccgtg
ctcaacgacatcgagatccaggttggccgcacgggcgccctgacgccggttgccaagctg
gagccgatcacggtcggcggcgttgtcgtttccaatgcgacgctccacaacgaggattac
atcaagggcatcggccaggacggcgagccgatccgcgagggcaaggacctgcgcattggc
gacacggtcaagatccagcgggcaggggatgtcatcccgcagatcgtcgatatcgatctg
gacaagcgctccgaaggtgcacagcctttcgaatttccgaccgtctgtcccgcctgcggc
agtcatgcggtgcgcgaagagaatgagaagaccggccgggtcgacgcggttcgccgctgc
accggggggctgatctgcccggcccaggcgaccgagaagctcaagcattttgtttcccgc
aacgctttcgacattgaaggcttcggcgacaagcaggtcgatgccttctatcaggacggc
atggtcatggcgccggcggacatcttcacgctggaagagcgcgacaagcgctcgctgacc
aagctgcgcaaccgggaaggctggggcgcggtctcggccaggaacctgttcgaggcgatc
aatgctcgccgcgatatcgatctgcaccggttcatctttgcccttggtatccgtcatgtc
ggcgaaggcaatgccaaactgctcgcccgcgcctacggctcctgggcggcgttctaccag
gccatgcaggccgcccatgatccggcaggcgaggcctttgcggaactgaacgacattgac
ggtatcggacacatcgttgccgacgcgctggtcgagttctttgccgagcagcacaatcgc
gcccagcttgacgcattgctggcagaagtcagtccgaaggacccggaaaaaatcgatgcc
agcgggtctccggttgccggcaagacagtggtgttcaccgggtccctggaacgcatgacc
cgggacgaggccaaggccatggccgaacgtttcggcgccaaaacctccgggtccgtttca
aagaagaccgatctcgtcgtcgccggtccgggcgccggctccaagctgaaaaaggctcag
gagctggacatcgaggtgatctccgaggacgactggttcgagctggttggggcgtga

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