Labrenzia sp. THAF35: FIU93_14900
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Entry
FIU93_14900 CDS
T06351
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
labt
Labrenzia sp. THAF35
Pathway
labt03030
DNA replication
labt03410
Base excision repair
labt03420
Nucleotide excision repair
labt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
labt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIU93_14900 (ligA)
03410 Base excision repair
FIU93_14900 (ligA)
03420 Nucleotide excision repair
FIU93_14900 (ligA)
03430 Mismatch repair
FIU93_14900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
labt03032
]
FIU93_14900 (ligA)
03400 DNA repair and recombination proteins [BR:
labt03400
]
FIU93_14900 (ligA)
Enzymes [BR:
labt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FIU93_14900 (ligA)
DNA replication proteins [BR:
labt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FIU93_14900 (ligA)
DNA repair and recombination proteins [BR:
labt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FIU93_14900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIU93_14900 (ligA)
MMR (mismatch excision repair)
DNA ligase
FIU93_14900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FIU93_14900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QFT68074
UniProt:
A0A9X7NNS3
LinkDB
All DBs
Position
3234265..3236517
Genome browser
AA seq
750 aa
AA seq
DB search
MCYQRLSPPFGSGIRFNPVINPVSPADTFREDIMTDTSFAHTDIDALTQEEAQVELKRLA
AEIAEHDRRYHQEDAPVISDADYDALRRRNASIEARFPNLILEDGPSAQVGAAPASGFGK
ITHRVPMLSLDNAFNDDDVRDFVGRVRRFLKFDPLMGALAVTAEPKIDGLSLSLRYENGT
LVYAATRGDGTTGENVTENAKTIKDIPENLSGTVPGVVEVRGEVYMAHKDFQALNERMAA
NGGKVFANPRNAAAGSLRQLKSEITASRPLRFFAYAWGEMSELPEDTQFGMVKQLEGWGF
QVNPLMKRCETVEELLGVYHGIEESRAQLDYDIDGVVYKVDRLDLQERLGFVSRSPRWAI
AHKFPAEQAYTILNDIEIQVGRTGALTPVAKLEPITVGGVVVSNATLHNEDYIKGIGQDG
ESIRGGKDLRIGDTVKIQRAGDVIPQIVDIDLDKRPDGAEAFEFPTVCPACGSHAVREEK
EKTGRRDAVRRCTGGLICPAQATEKLKHFVSRNAFDIEGFGDKQVDAFYKEGLVMAPADI
FTLEERDKRSLTKLRNREGWGAVSAKNLFEAINARREIDLHRFIFALGIRHVGEGNAKLL
ARAYGSWAVFYAAMKAAHDTAGEAWTELNDIDGIGHIVAEALAEFFAEQHNLNQLDALLV
EVSPKDAEKINASGSPVAGKTVVFTGSLERMTRDEAKAMAERFGAKTAGSVSKKTDLVVA
GPGAGSKLKKAQELEIEVISEGDWFDLVGA
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgtgctatcaacgcttgagcccgccattcggttccggtatccgatttaatccggtcatc
aacccggtctctcccgctgacacatttcgtgaagacatcatgactgacacttccttcgcc
cataccgacatcgacgccctgacgcaggaagaagcacaggtcgagctgaaacggctggcg
gcggaaatcgccgagcatgaccgccgctatcaccaggaagatgccccggtgatctcggat
gcggactatgacgccctgcgccggcggaacgcgtccatcgaggcccggtttcccaatctc
attcttgaagacggtccctctgcgcaggtgggggcggccccagcgtccggtttcggcaag
attactcaccgggtgccgatgctgtcgctggacaatgcgttcaacgatgacgacgtccgg
gacttcgtcggccgcgtgcgccggtttctgaagttcgatccgctgatgggggctctggcg
gttaccgcggagccgaagatcgacggtctgtcgctgtctcttcggtatgaaaacggcact
ctggtttacgccgcaacgcgaggtgacggcaccacaggtgaaaacgtcaccgagaacgcg
aagacgatcaaggatattccggagaatttgtccggcacggtgccgggtgtcgttgaagtg
cgcggcgaagtctatatggcgcacaaggattttcaggcgctgaacgagcgtatggcagcc
aatggcggaaaggtttttgccaacccgcgcaacgctgcggcgggctctctgcgccagctg
aagtccgaaatcacggcctcccgcccgctgcggttcttcgcttatgcctggggcgagatg
agcgagctgccggaagacacccagttcggcatggtcaagcagctggaaggctggggcttc
caggtcaacccgctgatgaaacgctgcgaaaccgtggaagagcttctcggggtctatcac
ggcatcgaggaaagccgtgcccagctcgattatgatatcgatggggtggtctacaaggtc
gaccggctggacctgcaggaacgcctcggctttgtctcgcggtcaccccggtgggcgatc
gctcacaagttcccggccgaacaggcttacaccattctcaacgacatcgagatccaggtt
ggccgaacaggtgccctgacgccggttgccaagctggagccgatcacggtgggcggtgtc
gtcgtttcaaacgcgaccctccacaacgaagactatatcaagggcattggccaggacgga
gagtcgatccgcggcggcaaggatcttcgtatcggtgacacggtgaagatccagcgtgcc
ggcgacgtcattccgcagattgtcgacatcgatctggacaaacgccccgatggggcggaa
gccttcgagtttccgactgtctgccccgcctgcggcagccacgcggtgcgcgaggaaaag
gaaaaaaccgggcgccgcgatgcggtgcgccgctgcaccggcggtctgatttgcccggcc
caggcaacggaaaagctcaagcatttcgtctcgcgcaatgccttcgacatcgaaggcttc
ggcgacaagcaggtcgacgccttctacaaggaaggccttgtgatggcgccggcggacatc
ttcacgctggaggagcgggacaaacgctctctcaccaagttgcgcaaccgggaaggttgg
ggggccgtttcggcgaagaaccttttcgaggcaatcaacgcgcggcgagagattgacctt
catcgtttcatcttcgccctgggcatccgtcacgtgggcgagggcaacgccaagcttctg
gcacgtgcctatggctcctgggcggtgttctatgcagccatgaaggcggcgcatgacacg
gcgggcgaagcctggacagagctcaatgacatcgacggcatcggccatatcgttgccgag
gcgctggcggagttctttgccgagcaacacaatctcaaccagctcgacgcgcttctggtc
gaggtgtcacccaaggacgctgaaaagatcaacgcctccggctcaccggtcgcaggcaag
acagtggttttcaccggctcgctggagcgcatgacccgcgacgaagccaaggccatggcc
gaacgctttggtgccaagacggcaggctccgtgtcgaaaaagaccgatctcgtggtggcc
ggtcccggtgctggttcaaagctgaaaaaggcgcaggagctggagatcgaggttatttcc
gagggtgattggttcgatctggtgggggcctga
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