Ligilactobacillus acidipiscis: LAC1533_1684
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Entry
LAC1533_1684 CDS
T05349
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
laca
Ligilactobacillus acidipiscis
Pathway
laca03030
DNA replication
laca03410
Base excision repair
laca03420
Nucleotide excision repair
laca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
laca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LAC1533_1684
03410 Base excision repair
LAC1533_1684
03420 Nucleotide excision repair
LAC1533_1684
03430 Mismatch repair
LAC1533_1684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
laca03032
]
LAC1533_1684
03400 DNA repair and recombination proteins [BR:
laca03400
]
LAC1533_1684
Enzymes [BR:
laca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LAC1533_1684
DNA replication proteins [BR:
laca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LAC1533_1684
DNA repair and recombination proteins [BR:
laca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LAC1533_1684
NER (nucleotide excision repair)
GGR (global genome repair) factors
LAC1533_1684
MMR (mismatch excision repair)
DNA ligase
LAC1533_1684
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LAC1533_1684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
5_3_exonuc
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-ProteinID:
SFV41105
UniProt:
A0A1K1KQC2
LinkDB
All DBs
Position
I:complement(1832583..1834607)
Genome browser
AA seq
674 aa
AA seq
DB search
MAADQANVAKQAQELRQQLNQWGREYYVLDQPTVEDAVYDQTYRQLQDLEKQHPEVITAD
SPTQRVGGHILSGFEKVTHETPMLSLGDVFSKDELRAFIDRLHTNVDEKVAFNCELKIDG
LAISLTYEDGVFVKGSTRGNGMIGEDITQNLKTIKAIPLRLSEPVSVEVRGECYMPKSSF
VHLNEYREEQGLPVFANPRNAAAGSLRQLNSKVTAARNLSTFIYYLMEPEKFGVKSQSAA
LKKMHEWGFKTNTASRLATNMDEVNAYIDDYQDKRTQLEYDIDGIVLKADPFTVQQELGN
TVKVPRWAIAYKFPPDEQETVVRDIEWTVGRTGVVTPTAVMDPVQLAGSTVSRASLHNPD
YLEEKGIRVLDTVKLHKAGDIIPEISEVVLDKRPADSTLYEIPTHCPECGAKLVHLDDEV
ALRCVNPKCPSLLKESVIHFASRNAMDIRGLGKRIIQQMFDLELITDVADLYKLTKEDLL
RLDKVKDKSASNLLEAIDASRQESVEHLLFGLGIRHVGAKAARILAQHFGSLDQISHASA
QEIEEIDSMGGVIAESIVKYFATAEVADLIGELKKQKVNMDYLGKTASQVEEQAQESEFN
KQTVVLTGTLDTITRADAKKWLQEHGAKVTGSVSKKTTLLIAGHDAGSKLTKAQDLGTQI
MDEAQFVKKMGAER
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagatcaggcaaatgtcgcaaaacaagcgcaagaattacgacaacaattaaat
caatggggccgggagtactatgttttggatcagccgacagtcgaagatgcagtttatgat
cagacttaccggcagttgcaggacttagaaaaacaacatcccgaagtcattactgcggat
tcacctactcagcgagtcggtggacatattttatccggctttgaaaaagttactcacgaa
acaccaatgctttcactcggagatgttttctcaaaagatgaattgcgggccttcattgac
cgcctgcataccaacgttgatgaaaaggtcgcctttaattgtgaattaaaaatcgatggt
ttagcgatctcattgacatatgaggatggagtctttgtcaaaggctcgacccgtggtaat
gggatgatcggtgaagacatcactcaaaacttgaaaacgatcaaggcgatccctttgcgc
ttgagcgaacctgtttcagtcgaagttcgtggtgagtgctacatgcctaagagttctttt
gtacacttgaatgaataccgtgaagagcagggcttaccggtttttgcgaatccgcgtaac
gcggcggccgggtctttacgtcaattgaattcaaaggtcacagcggcacgaaatctgagt
acctttatctattacttaatggaaccagaaaaatttggtgtcaagtcacaaagtgctgcc
ttaaaaaagatgcatgaatggggctttaagacgaataccgcttcacgtttagcaactaat
atggatgaagttaacgcctatattgatgattatcaggacaaacgtactcagctcgaatat
gatatcgacgggatcgttttgaaggctgatccatttacagtccagcaagagttaggcaat
actgtcaaagttccccgctgggcgatcgcctataaatttccgccagacgaacaagaaact
gttgtccgcgacattgaatggacggtgggacggactggtgtggtgacaccgactgcggtc
atggatccagtccaattggctggttcaacggtgagtcgggcgtcattacacaaccccgac
tacttggaagaaaaagggatccgcgttttagataccgttaagctgcataaggctggcgat
atcattcctgaaatttcagaggtcgtgcttgacaaacgtcccgctgactctactttatat
gagatcccgacccactgcccagaatgcggtgcaaagctggtacacttggatgatgaagtc
gcattacgttgcgtcaatcctaaatgcccgtcacttttgaaagaaagtgtgatccatttc
gcatccagaaacgcgatggacattcggggcttgggaaaacggatcatccagcaaatgttt
gacttggagctgatcacggatgtcgctgatctgtataagttaactaaagaagacttgctc
aggttagataaggtcaaagataagtcagcctctaatttgcttgaggctatcgatgccagc
cgccaagaatcagtggagcatctgttgtttggcttagggatccggcatgtcggtgcaaaa
gctgcacggatcttggcgcaacattttggcagcttggatcagatcagtcatgcttcggca
caagaaatcgaggagatcgattcgatgggtggagttattgcagaaagtatcgttaagtat
tttgcgactgctgaagtggccgacttgatcggtgaattaaagaaacaaaaagtcaacatg
gattatttgggcaaaacagccagccaagttgaagaacaagctcaagaaagtgaatttaac
aagcagacggtcgttttgaccggaacgctggatacgatcacgcgagctgacgctaaaaaa
tggctgcaagagcatggcgccaaagtcacgggcagtgtctctaagaaaacgacgcttttg
atcgcgggtcatgatgccggcagcaagctgaccaaagcccaagacttaggtacgcagatc
atggatgaggcacagtttgttaagaaaatgggggcagaacgatga
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integrated database retrieval system
