Lacibacter sediminis: H4075_01400
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Entry
H4075_01400 CDS
T06746
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lacs
Lacibacter sediminis
Pathway
lacs03030
DNA replication
lacs03410
Base excision repair
lacs03420
Nucleotide excision repair
lacs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lacs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H4075_01400 (ligA)
03410 Base excision repair
H4075_01400 (ligA)
03420 Nucleotide excision repair
H4075_01400 (ligA)
03430 Mismatch repair
H4075_01400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lacs03032
]
H4075_01400 (ligA)
03400 DNA repair and recombination proteins [BR:
lacs03400
]
H4075_01400 (ligA)
Enzymes [BR:
lacs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H4075_01400 (ligA)
DNA replication proteins [BR:
lacs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H4075_01400 (ligA)
DNA repair and recombination proteins [BR:
lacs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H4075_01400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H4075_01400 (ligA)
MMR (mismatch excision repair)
DNA ligase
H4075_01400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H4075_01400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_ligase
AmpE
SRP_SPB
Motif
Other DBs
NCBI-ProteinID:
QNA44884
UniProt:
A0A7G5XHD1
LinkDB
All DBs
Position
complement(300144..302246)
Genome browser
AA seq
700 aa
AA seq
DB search
MYSADNTKQLQQSTTSLLHQLKSSSLSEEQIEELRNALRFHEYRYYIQNDPLISDFEYDQ
LYKALEKIEAANPSLITSDSPTQRVAKGLGNDFKKVQHLVPMLSLENSYDADDLIDWDRK
AKEASGLDHIEYCVEPKFDGASISLIYEDDKLVRAATRGDGTEGEEITTNVRQIRSIPLS
AEFSKFAIKQIEIRGEILMSKKNFKAYNDQLAEENLPPLANPRNAASGSLRIKDAKEVAR
RNLEAFLYHVGYVAMVDRKQSTYDVLHTHSGALKMMWELGFRSPEKEKKICKGIQEVIDY
CNEFEQKRDTLPYEIDGMVIKVNDLQLQDQMGMTSHHPRWAIAYKFKARQGTSKLRAVEY
QVGRTGAVTPVAKIDPVAIGGVTVTSISLHNQDFIAEKDLMLGDTVLVERAGDVIPYIVK
SMAELRTGKEEKIIFPTHCPVCNSVLVKPAEEAVWRCNNYQCEAQVVERIIHFNSKDAMD
IRGMGDANVRKFYELGFLKDIPSLYRLPYDKIKGLEGYGAKSVDNLQTAIENSKKQPLFR
LIYALGIRFVGEATAKTLANSTKHLLDIAGKTLEELQQLEDIGPRVAGSIHDFFSNEQNL
QLLKELEELGLQLKNEQKESKHEGNLTGVTFLFTGTLPTLKRSAAEQMAEEHGGSILSGV
SAKLNYLVVGEDAGSKLEKAKKISTIKIITEEEFLALLKN
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtattcagccgataataccaagcaattgcagcaaagcaccacaagcttgctgcatcaa
ctgaaaagttcatctctcagtgaagaacaaatcgaagaactgagaaatgctctgcgtttc
catgaatatcgttattatattcagaacgatccgctcatcagcgattttgaatatgatcag
ttatacaaagccttagaaaagatcgaagctgccaatccttcgctcattacaagcgactca
cctactcaacgtgtagcaaaagggttgggaaatgattttaaaaaagtacagcatcttgtt
ccgatgctcagtcttgaaaactcttatgatgctgatgatcttattgattgggaccgcaaa
gcgaaagaagcaagcggacttgatcatattgaatactgcgttgagccaaagtttgacggt
gccagcatttcacttatttatgaagatgataaactggttcgggctgcaacacgtggcgat
ggaacagaaggtgaagagatcactaccaatgttcgacaaattcgttccattccattgtca
gcagagttttcgaaattcgccatcaaacaaattgaaatacgtggtgagatattgatgagt
aagaaaaatttcaaagcctataacgatcaattagcggaagaaaatttgccgccgcttgcc
aatccacgcaatgcagccagcggcagcttacgtataaaagatgcaaaagaagttgcccgc
agaaatcttgaagcatttttatatcatgttggttacgtagcaatggttgatcggaagcaa
tcaacatatgatgtattacacacgcacagcggtgcattgaaaatgatgtgggagcttggc
ttccgtagtcctgaaaaagaaaaaaagatctgcaaaggcatacaggaagtaattgactac
tgtaatgaatttgaacagaagcgggatacactgccttacgaaattgatggcatggtgatc
aaagtaaacgatctgcaactccaggatcaaatgggcatgaccagtcatcacccacgttgg
gccattgcctataaattcaaagcaagacagggaaccagtaagctccgtgcagttgaatac
caggttggccgcacaggtgcagttacacctgttgccaagatcgatccggtagctattggc
ggtgtaacggtaacgagtatctctttacataaccaggattttattgcagagaaagacctg
atgctgggcgatacagttttggtagaacgtgcgggtgatgtaattccttacatcgttaaa
tcaatggctgagctgcgtacaggtaaagaagaaaagatcatcttccctacccattgcccg
gtttgcaacagtgtgttggtaaaaccagcagaagaagctgtgtggcgttgtaataattat
caatgtgaagcgcaggtggttgaacgtatcattcatttcaacagcaaagatgcgatggat
attcgtggcatgggcgatgcgaatgtgcggaagttttatgagctcggctttctgaaagat
attccatcgttgtatcgtttgccctatgataagatcaaaggattggaaggttacggcgca
aagagtgttgataatctgcaaacagcaattgaaaattcaaagaagcaaccgttattccgt
ttgatctatgcattaggtatccgctttgttggtgaagcaacggcaaagacattagccaat
tcaaccaaacatctgctggatattgccggaaaaacattggaagaattacaacaactggaa
gatattggtccgagagttgcaggaagcattcatgattttttcagcaacgaacagaacctg
caactattgaaagaactggaagaacttggcttgcaattaaagaatgagcagaaagaaagt
aaacatgaaggtaatttaacgggtgttacttttttatttacaggaacattgcctaccttg
aagagaagtgctgcagaacaaatggcagaagaacatggtggaagcatattgagtggcgtg
agtgcaaaattaaattatcttgtagtgggtgaagatgcaggcagcaaactggaaaaagcg
aaaaaaataagcaccataaaaattataacagaagaagaattcctggcactgttaaaaaat
taa
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