Lactococcus allomyrinae: D7I46_12665
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Entry
D7I46_12665 CDS
T05686
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lact
Lactococcus allomyrinae
Pathway
lact03030
DNA replication
lact03410
Base excision repair
lact03420
Nucleotide excision repair
lact03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lact00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D7I46_12665 (ligA)
03410 Base excision repair
D7I46_12665 (ligA)
03420 Nucleotide excision repair
D7I46_12665 (ligA)
03430 Mismatch repair
D7I46_12665 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lact03032
]
D7I46_12665 (ligA)
03400 DNA repair and recombination proteins [BR:
lact03400
]
D7I46_12665 (ligA)
Enzymes [BR:
lact01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D7I46_12665 (ligA)
DNA replication proteins [BR:
lact03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D7I46_12665 (ligA)
DNA repair and recombination proteins [BR:
lact03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D7I46_12665 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D7I46_12665 (ligA)
MMR (mismatch excision repair)
DNA ligase
D7I46_12665 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D7I46_12665 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
tRNA-synt_1c
RNA_ligase
DUF678
Motif
Other DBs
NCBI-ProteinID:
AYG02019
UniProt:
A0A387BLF7
LinkDB
All DBs
Position
2644262..2646322
Genome browser
AA seq
686 aa
AA seq
DB search
MNIESRIKELTELLNKYAYEYYTLDRPSVEDDEYDRLYHELVALESDNPQLIRADSPTHR
TGDVILDGFEKFRHPYNLYSLGDVFSREELAVWEERVRKDIPNPEYICELKIDGLSLSLY
YEEGILVTAATRGDGLVGENITENVKRIKDVPLQLSEPIDIVVRGEAYLPRTNFSKLNAE
RELEGLAAFANPRNAAAGTLRQLDTKVVAKRGLATFLYQEASDATNDTQEEVLEYFVRLG
FQVNPVRKFARNMDEIWEFIEQATLLRDELAYDIDGVVVKVNNLAQQEELGFTVKAPRWA
IAYKFPAEVAETEILDVEWTVGRTGVVTPTAVMTPVLLAQTVVARATLHNVDYIKEKDIR
KHDKVLIYKAGDIIPKVSRVLFEERESAKRKRKRQRVTRTVWTRFERRIVRKWTVFSERI
DNQLDIPTKCPECDSKLLHFEDEVALRCVNPLCPAQIREKLIHFASRDAMNIVGLGPSVI
SQLFDKKLVADVADLYQLKAEKLAELDKIQMKSAQKIVDAIGSSRENSSEKLLFGLGIRH
VGAKAAKLLLERFGNLRQLSLATEEEIAEIPSLGGVIATALTTYFATDGAKQLLDELENA
GLNFNYLGAVSTDGILSGKTVVLTGKLMTLKRAEAKAKLESLGANVSGSVSKKTDLVVAG
EDAGSKLAKAQELGIEIWSEQDLLDL
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgagtcaagaattaaagaattaacagagttacttaataaatatgcttacgaa
tattatacgttagataggccgtctgtagaggatgatgagtatgaccgcctttatcatgaa
cttgttgcattagagagtgataatccacagttgatacgggctgattcgccaactcatagg
actggcgatgtgatattggatggttttgagaagtttcggcatccgtacaacctttatagt
ttgggggatgttttttctcgtgaagaattagcggtttgggaagaacgtgttcgtaaagat
attcctaatccagaatatatttgtgaattaaaaattgatggtctttctctctccctttat
tatgaagaagggatattggttactgcagcgacacggggtgatggtctagttggggaaaat
attactgagaatgtaaagaggataaaggatgtgcctcttcaactgtctgagccgattgat
atcgtggtacgtggtgaggcttatttgcctagaacgaatttttctaagttaaatgccgaa
cgtgaactggaaggtttggcggcttttgctaatcctagaaatgctgcggcaggaacattg
cgacagttggatacaaaagttgtagcaaaacgcggtttggcaacttttctctatcaagaa
gctagtgatgctacaaatgacactcaagaggaggtacttgagtatttcgtgcggcttggt
tttcaagtgaatcctgtgcggaaatttgcacgcaatatggatgagatttgggaatttata
gagcaagcaaccctgctaagagatgaacttgcttatgatattgatggtgtggttgtaaaa
gtaaacaatcttgcacaacaagaggaacttggttttactgtaaaagcaccaagatgggcg
attgcttataagtttcctgctgaggttgctgaaacagaaattttagatgtagagtggaca
gtaggacgtacaggagttgttactccgacagcagtaatgacacctgtgcttcttgcacaa
acagtggtagctcgtgcaactttgcataatgtagactatatcaaagagaaagatattcgt
aaacacgataaagtattgatttataaggcgggagatatcatccctaaagtgagtcgtgta
ctttttgaagagcgggagtcggctaaacgtaaacgtaaaagacagagggtcacaaggaca
gtttggacaaggtttgaaagacgtattgtgaggaaatggactgttttttcggaaagaata
gataaccagcttgatattccaacgaagtgtccagagtgtgattcgaagttgctccatttt
gaggatgaagtggcattgcgctgtgtcaatcctctttgtcctgcgcaaatacgagaaaaa
ttgattcattttgctagtcgtgatgcgatgaatatcgtgggacttggaccgtcggttatt
tcacaattatttgataagaaattggtagcggatgtggcggatttatatcagttgaaggct
gaaaaactggctgaattggacaagattcagatgaaatctgctcagaaaattgttgatgcg
ataggaagtagtcgtgaaaattcttctgaaaagttactttttggtttggggattcgtcat
gttggtgcaaaagctgctaaactactcttagagcgctttggtaatttacgacaattatct
ttggcaactgaggaggagattgcggagatcccgtctttaggtggggtaattgcgacagca
cttacaacgtattttgcaactgatggagcaaagcaattactagatgaacttgaaaatgcc
ggtcttaattttaattatttgggtgctgtcagtactgatggaattttatcagggaaaaca
gtggtgctgacaggaaaattaatgacactgaagcgtgctgaagctaaagcaaagcttgaa
agcttgggagcgaatgtatcgggttcggtttctaagaaaacagaccttgtggtggctggt
gaggatgctggttcgaagttggctaaagctcaggaattgggtattgaaatttggtcagaa
caagatttgttggatttgtag
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integrated database retrieval system
