Lacinutrix sp. WUR7: FG167_17250
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Entry
FG167_17250 CDS
T10184
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
lacw Lacinutrix sp. WUR7
Pathway
lacw03030
DNA replication
lacw03410
Base excision repair
lacw03420
Nucleotide excision repair
lacw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lacw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FG167_17250 (ligA)
03410 Base excision repair
FG167_17250 (ligA)
03420 Nucleotide excision repair
FG167_17250 (ligA)
03430 Mismatch repair
FG167_17250 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lacw03032
]
FG167_17250 (ligA)
03400 DNA repair and recombination proteins [BR:
lacw03400
]
FG167_17250 (ligA)
Enzymes [BR:
lacw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FG167_17250 (ligA)
DNA replication proteins [BR:
lacw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FG167_17250 (ligA)
DNA repair and recombination proteins [BR:
lacw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FG167_17250 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FG167_17250 (ligA)
MMR (mismatch excision repair)
DNA ligase
FG167_17250 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FG167_17250 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
5_3_exonuc
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QRM90917
LinkDB
All DBs
Position
complement(3979632..3981626)
Genome browser
AA seq
664 aa
AA seq
DB search
MNTKEYIQNLRNELREHNYNYYVLDNATISDYDFDIKLKELQALEEKHPEFYDANSPSLR
VGGTVTKNFNTVVHTHRMYSLDNSYSLEDLQDWETRIKKMVDGEIQYTCELKYDGASISL
TYENGSLLRAVTRGDGMQGDEVTANIKTIKSVPLQLKGDYPPVFDIRGEIVLPFEGFNKM
NEERIDIGEEPYRNPRNTASGSLKLQDSAEVAKRPLECLLYNITGENLGIATQMESLEKA
RQMGFKVPDAAKLVNSIDEVLEFINYWDKERHNLPYETDGVVVKVNDLQQQEELGYTAKA
PRWAMAYKFKAERVSTRLNSISYQVGRTGAITPVANLEPVELAGTTVKRASLHNSDQIEK
LDIRVGDEVFVEKGGEIIPKIIAVDFTKRPENSQPTIYITHCPECNTLLERDEGEAKHFC
PNYYGCTPQIVGRIQHYISRKAMDIEGLGGETVALLVQAGLITNYSDLYTLTKEQLMPLE
RMAEKSAENLIKGVEASKQIPFERVLFALGIRYVGETVAKKLAKHYKSIDAIANATQEEL
VNVDEIGIKIAESVVLFFASEENRNTIEKLRSFGVQLEVSAEKLANQTNKLENKIFVVSG
VFEVVSRTELKKLIEDNGGKVSSSISAKTSYIVAGDKMGPSKKEKAEKLGVSLISEQEFL
QMLD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaagaatacatacaaaacttacgtaacgagcttcgtgagcacaactataat
tattacgttttagataatgcgactattagtgattacgattttgatataaaattaaaagaa
cttcaggcgttagaagaaaagcatccagaattttacgatgcaaactcaccaagcctacgc
gtaggaggtacagtaactaaaaattttaataccgttgtacatacgcacagaatgtattct
ttagataattcgtattccttagaagatttacaagactgggaaactagaattaaaaagatg
gtggatggagaaattcaatacacctgcgagttaaaatacgatggtgcatccataagttta
acctatgaaaacggaagtttgcttcgcgcagtaactcgtggcgatggtatgcaaggggat
gaagtaaccgcaaatattaaaacaataaagtcggtaccattacaattaaaaggagattac
ccacctgtatttgatatacgcggcgaaattgttttgccttttgaagggtttaataaaatg
aacgaagagcgtatagatattggggaagaaccttatagaaatccgagaaacacagcatct
ggaagtttaaaacttcaggatagtgcagaagttgcaaagcgaccattagaatgtttgttg
tataatattacaggagaaaatttagggattgcaacacaaatggaaagtctagaaaaagcg
agacagatgggatttaaagttccggatgcagccaaactagtaaactctattgatgaagtt
ttggagtttataaattattgggacaaagaaagacataatttgccttacgaaacagatgga
gtagtagtaaaggtaaatgatttacagcaacaagaagaattgggttatacggccaaagca
ccacgttgggcaatggcgtataagtttaaggcagagcgcgtttctacgcgattaaacagc
atttcttatcaggttggaagaacgggagcgataacgccagttgccaatttagaacctgta
gaactagcaggaaccacagtaaaaagagcttctttacataatagtgatcaaattgaaaag
ttagatattagagttggtgatgaggtgtttgtagaaaaaggaggggagattatacctaaa
ataattgccgtagattttaccaaacgaccagaaaattcacaaccaaccatatacataacg
cactgtccggaatgcaacacgcttttagaaagagatgaaggagaagcaaaacatttttgt
ccgaattattatggttgtaccccacaaattgttggaagaattcagcattatatttctaga
aaagcaatggatatcgaaggtcttggtggtgaaactgtagcacttttagtgcaagcagga
ttgattaccaattattctgatttgtatacgttaactaaagagcagttgatgcctttagaa
agaatggccgaaaaaagtgctgagaatttaataaaaggcgtggaagcttcaaagcaaatc
ccttttgaaagggtgctttttgctttaggaattagatatgtaggtgaaacggttgctaaa
aaattagcaaaacattataaaagtatagatgccatcgctaatgcaacacaagaagaatta
gtaaatgtagatgaaatagggattaaaatagcggaaagtgttgtgctgttttttgcttcg
gaagaaaacagaaataccattgaaaaactaagaagttttggtgtgcagttagaagtttct
gctgaaaaattagctaatcaaaccaacaaattagaaaataaaatatttgtcgtttcggga
gtttttgaggttgtttccagaaccgagcttaaaaaattaatagaagataatggtggtaaa
gtttcgtcttctatatctgctaaaacgagttatattgtagcaggagacaaaatgggacca
agtaaaaaagaaaaagcagagaaattgggagtatcattaatttctgaacaggaattctta
caaatgcttgattaa
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